Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31046
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 59 2e-09
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 57 8e-09
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 4.3
02_02_0470 - 10700092-10700505 28 4.3
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 27 5.6
11_06_0521 + 24544254-24544964 27 5.6
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 27 7.4
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 27 7.4
10_08_0951 - 21769342-21769752 27 9.8
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 27 9.8
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 27 9.8
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF
Sbjct: 101 SGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF 147
Score = 36.7 bits (81), Expect = 0.009
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 53 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 217
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 218 HAGKRVVLV 244
+ GKRVV +
Sbjct: 88 YMGKRVVFL 96
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 56.8 bits (131), Expect = 8e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 124 SGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 170
Score = 34.3 bits (75), Expect = 0.049
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 104 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV +
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFL 119
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 314 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 436
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>02_02_0470 - 10700092-10700505
Length = 137
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 179 LKIGTVCILLAGRHAGKRVVLVGI 250
LK G ILL GR+AG++ V+V +
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRV 28
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 297 RIESKRSSN*KQTAGRIPTSTTLLPACLPARRMQT-VPIFRLGRILR 160
R E +RS + K+ +P LLP +P R +P FR+ +++R
Sbjct: 176 REERRRSPDRKEPTPPLPPPPPLLPELIPGRTGGIYIPPFRMAQMMR 222
>11_06_0521 + 24544254-24544964
Length = 236
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 14 KKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKI 121
KK Q+GG+ +GG +T P RR P I
Sbjct: 166 KKRQASSSQLGGDHDGGQQTKPPARRPGLRPRMPSI 201
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 43 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWP 141
W+ E Q+++P ++ L H+G+ C +WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
>03_02_1023 +
13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 245 GILPAVCF*LLDLLLSIRARYAVFLSAM*SAPPPEFHSATSNCQNTS 385
G+ VCF L+LL + Y VFL S PP+ A Q T+
Sbjct: 591 GVRMNVCFYYLELLCTTAMSYKVFLK---SIRPPKKRPAQGTSQKTT 634
>10_08_0951 - 21769342-21769752
Length = 136
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 179 LKIGTVCILLAGRHAGKRVVLVGI 250
LK G ILL GR AG++ V+V +
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRV 28
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 296 RARYAVFLSA---M*SAPPPEFHSATSNCQNTSMMITSRR 406
R+RY +FLS + S PPE S NTS++ +RR
Sbjct: 455 RSRYKLFLSCSLILTSVIPPELPMELSIAVNTSLIALARR 494
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 19 ADCCCKADWR*EEWGNQNSTPQT*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 180
ADC WR +G+Q P T + +NP W+P + P+ P
Sbjct: 28 ADCSSTMSWRFPLFGSQQQQPDT------NFQDNPTQPWYPPSVLGSSSHPSLP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,601
Number of Sequences: 37544
Number of extensions: 311016
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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