Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31046
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   7e-07
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_37314| Best HMM Match : Mlp (HMM E-Value=2)                         27   7.7  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +1

Query: 280 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 399
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 43


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 64  NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 180
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 31   CKADWR*EEWGNQNSTPQT*EVLLPHSGENPCFIWWP 141
            C  DWR    G + +  Q   +LL  S ENP F W P
Sbjct: 929  CTRDWRSMHDGTKKAA-QNPTILLVFSKENPRFRWNP 964


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 248 ILPAVCF*LLDLLLSIRARYAVFLSAM*SAPPPEFHSATSNCQNTSMMITS 400
           ILPA     +D+  S  A     L A     PP   S+TSN Q T+ + TS
Sbjct: 769 ILPANLVFPMDITTSSAAELIKRLQASGVMQPPVITSSTSNIQPTAAITTS 819


>SB_37314| Best HMM Match : Mlp (HMM E-Value=2)
          Length = 360

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207 SLVDMQARGLYLLEFCQRSAFSYWTFCFQFVPATPYS-SALCDRHLHQ 347
           S+  M + GL LLEFC R   S     FQ   +   +   L  +H HQ
Sbjct: 52  SVGKMNSNGLMLLEFCTRLQLSVMGTMFQLKDSLKNTWQHLRSKHWHQ 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,763
Number of Sequences: 59808
Number of extensions: 325377
Number of successful extensions: 916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)