Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31046
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    64   6e-11
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    27   8.8  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    27   8.8  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    27   8.8  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    27   8.8  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    27   8.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +1

Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
           SGLLLVTGP   N  PLRRI Q +VI TS ++++   K+P+H ND+YF
Sbjct: 98  SGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF 145



 Score = 37.1 bits (82), Expect = 0.006
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +2

Query: 167 IRPNLKIGTVCILLAGRHAGKRVVLVGILP 256
           +R  L  GTV I+LAGRH GKRVV +  LP
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLP 96


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 98  FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 232
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical
           protein C38C10.2 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 206 LAGRHAGKRVVLVGILPAVCF*LLDLLLSIRARYAV 313
           LA R+ GKRVV V IL +    LL+ + +  + YA+
Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNPVAARTSEYAL 139


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKR 445
           PPP   S TS  NC ++ + +   +  SAS   S   R
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNR 535


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKR 445
           PPP   S TS  NC ++ + +   +  SAS   S   R
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNR 610


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKR 445
           PPP   S TS  NC ++ + +   +  SAS   S   R
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNR 544


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKR 445
           PPP   S TS  NC ++ + +   +  SAS   S   R
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNR 688


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKR 445
           PPP   S TS  NC ++ + +   +  SAS   S   R
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNR 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,006,282
Number of Sequences: 27780
Number of extensions: 239219
Number of successful extensions: 605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)