Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31046
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    63   1e-10
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    63   1e-10
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    60   5e-10
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   0.89 
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    28   2.7  
At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i...    27   4.7  
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i...    27   4.7  
At1g33870.1 68414.m04199 avirulence-responsive protein, putative...    27   8.3  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 35/49 (71%)
 Frame = +1

Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
           ASGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 77  PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFL 110


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 35/49 (71%)
 Frame = +1

Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
           ASGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 77  PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFL 110


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 29/49 (59%), Positives = 34/49 (69%)
 Frame = +1

Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
           +SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161



 Score = 34.7 bits (76), Expect = 0.031
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +2

Query: 77  PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFL 110


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 77  PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 166
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 37  ADWR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 144
           A W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 94  AIWQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 663

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 84  LRGTVLVPPFFSPPICFTTTVSF 16
           + GTVL PP  +PP+   +T SF
Sbjct: 248 IEGTVLPPPVSAPPLPLVSTPSF 270


>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 659

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 84  LRGTVLVPPFFSPPICFTTTVSF 16
           + GTVL PP  +PP+   +T SF
Sbjct: 248 IEGTVLPPPVSAPPLPLVSTPSF 270


>At1g33870.1 68414.m04199 avirulence-responsive protein, putative /
           avirulence induced gene protein, putative / AIG protein,
           putative similar to SP|P54120 AIG1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF04548: AIG1 family
          Length = 252

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 11  PKKLTVVVKQIGGEK---NGGTR--TVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRI 169
           PK LT V++  GG K   N  T+      K+ K      E I  ++GG+P++  + R+
Sbjct: 123 PKFLTGVLRLCGGRKVVFNNMTKDKVKNAKQVKQLLAHVEAIEKNNGGKPYTNQMHRM 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,402
Number of Sequences: 28952
Number of extensions: 230067
Number of successful extensions: 552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)