Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31043
(322 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 45 4e-04
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 44 7e-04
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 42 0.003
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 42 0.003
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 40 0.008
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 40 0.008
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 40 0.011
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 39 0.019
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 38 0.043
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 37 0.075
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 36 0.23
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing... 35 0.40
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 35 0.40
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 34 0.53
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 34 0.53
UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza sa... 34 0.53
UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2; ... 32 2.1
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 31 4.9
UniRef50_Q7SBJ3 Cluster: Putative uncharacterized protein NCU061... 31 4.9
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 44.8 bits (101), Expect = 4e-04
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 253 MLGGKVHGYLARAGKVKGQTPKV 321
++GGKVHG LARAGKV+GQTPKV
Sbjct: 70 VVGGKVHGSLARAGKVRGQTPKV 92
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 53 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 193
MQ+ ++G + H ++V+ + + Q+K + + ED LS G P
Sbjct: 1 MQVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVP 47
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 44.0 bits (99), Expect = 7e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 253 MLGGKVHGYLARAGKVKGQTPKV 321
+LGGKVHG LARAGKV+ QTPKV
Sbjct: 68 LLGGKVHGSLARAGKVRAQTPKV 90
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 41.9 bits (94), Expect = 0.003
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +1
Query: 253 MLGGKVHGYLARAGKVKGQTPKV 321
MLGGKVHG L AGKV+GQTPKV
Sbjct: 68 MLGGKVHGSLDCAGKVRGQTPKV 90
Score = 33.5 bits (73), Expect = 0.93
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 62 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 193
H + Q H L V GQE + QIK + A++ +D L L G P
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHV---ASLEGKDQVLLLAGTP 44
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
GKVHG LARAGKV+GQTPKV
Sbjct: 2 GKVHGSLARAGKVRGQTPKV 21
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 53 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCG 187
MQL + Q H L+V GQE++ QIK + +L ++ ED + L G
Sbjct: 1 MQLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAG 45
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
GKVHG LARAGKVK QTPKV
Sbjct: 2 GKVHGSLARAGKVKSQTPKV 21
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 39.9 bits (89), Expect = 0.011
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
GK+HG LARAGKVK QTPKV
Sbjct: 2 GKIHGSLARAGKVKNQTPKV 21
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 39.1 bits (87), Expect = 0.019
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 265 KVHGYLARAGKVKGQTPKV 321
KVHG LARAGKV+GQTPKV
Sbjct: 1 KVHGSLARAGKVRGQTPKV 19
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 37.9 bits (84), Expect = 0.043
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
GKVHG LARAGKVK TPKV
Sbjct: 2 GKVHGSLARAGKVKSATPKV 21
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 37.1 bits (82), Expect = 0.075
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 265 KVHGYLARAGKVKGQTPKV 321
KVHG LARAGKV+GQTP V
Sbjct: 1 KVHGSLARAGKVRGQTPNV 19
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 35.5 bits (78), Expect = 0.23
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
GK+HG LA+AGKV+ QTPK+
Sbjct: 2 GKLHGTLAKAGKVRKQTPKI 21
>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S30 containing protein - Tetrahymena
thermophila SB210
Length = 80
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPKV 321
G++HG LA+AGKV+ QTPKV
Sbjct: 2 GRMHGTLAKAGKVRKQTPKV 21
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 62 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 193
++R + H L+V G E++ Q K + +L + ED + L G+P
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSP 47
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 34.3 bits (75), Expect = 0.53
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 50 NMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 193
++QL +R H L+V G E+ IK + +L ED + L G+P
Sbjct: 16 DVQLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSP 63
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 34.3 bits (75), Expect = 0.53
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 83 HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 193
H L V GQE + Q+K + +L + ED + L G P
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIP 39
>UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza
sativa|Rep: OSJNBb0048E02.10 protein - Oryza sativa
subsp. japonica (Rice)
Length = 423
Score = 34.3 bits (75), Expect = 0.53
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 70 RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 189
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S30 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 32.3 bits (70), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQTPK 318
GKVHG L RAGKV+ QT K
Sbjct: 2 GKVHGGLTRAGKVRNQTKK 20
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 262 GKVHGYLARAGKVKGQT 312
GKVHG L RAGKV+ QT
Sbjct: 2 GKVHGSLTRAGKVRNQT 18
>UniRef50_Q7SBJ3 Cluster: Putative uncharacterized protein
NCU06177.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU06177.1 - Neurospora crassa
Length = 810
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 44 FYNMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDED 166
FY+ +L+ + T +L +GQE +G+ +R+ + GD+D
Sbjct: 710 FYHTRLNKKKHDTAILGSDGQEEVGEQGQRLWSGTGKGDDD 750
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,177,871
Number of Sequences: 1657284
Number of extensions: 4931561
Number of successful extensions: 12684
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12683
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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