Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31043
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           42   1e-04
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.022
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   0.47 
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    27   3.3  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    27   4.3  
07_03_1378 + 26158233-26158562,26159075-26159176,26159551-261598...    26   5.7  
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    26   7.6  
01_01_0743 - 5763654-5766902                                           26   7.6  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +1

Query: 262 GKVHGYLARAGKVKGQTPKV 321
           GKVHG LARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 70  RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 189
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 94  RQWPGVHWSDQGTHSY 141
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -1

Query: 163 FIANCSKSTNAFLDLTNGLLAIDVQDV-----CRLPSDMQLHIVKS 41
           FI + S   +AF     GLL++ VQD+     C  PS +QLH +KS
Sbjct: 346 FIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPS-VQLHTIKS 390


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 63  ISEGNRHTSWTSMARS 110
           +S+GN H  WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436


>07_03_1378 +
           26158233-26158562,26159075-26159176,26159551-26159850,
           26160006-26160068
          Length = 264

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 308 CPLTLP-ARAKYPCTLPPSMAL 246
           CP   P A A +PC LPP  AL
Sbjct: 20  CPKPAPPASACFPCALPPRAAL 41


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 115 WSDQGTHSYSCCSWR*RPYSI 177
           W+D G  +YS  S R  PY++
Sbjct: 497 WADPGVDAYSAASLRASPYAV 517


>01_01_0743 - 5763654-5766902
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 244 HSAMLGGKVHGYLARAGKV 300
           H + +GG VHGY  R G +
Sbjct: 523 HYSFIGGVVHGYSVRTGLI 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,570,636
Number of Sequences: 37544
Number of extensions: 143048
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)