Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31043
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           38   0.002
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)               26   5.9  
SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)                26   7.9  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   7.9  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                26   7.9  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 265 KVHGYLARAGKVKGQTPKV 321
           KVHG LARAGKVK QTPKV
Sbjct: 2   KVHGSLARAGKVKSQTPKV 20


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 195 KGAPHNDRVRSSSPTAARVRMRS 127
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 32  WLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERIR 139
           W I  Y  + H+RG+  H  +V GQ+   + KE +R
Sbjct: 9   WGINTYRHKEHVRGRDRHKENVRGQD---RHKEHVR 41


>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
          Length = 1085

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -3

Query: 308  CPLTLPARAKYPC--TLPPSMAL 246
            CP TLP +   PC  TLPP   L
Sbjct: 956  CPRTLPPQQLLPCPRTLPPQQLL 978



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -3

Query: 308  CPLTLPARAKYPC--TLPPSMAL 246
            CP TLP +   PC  TLPP   L
Sbjct: 968  CPRTLPPQQLLPCPRTLPPQQLL 990


>SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)
          Length = 301

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  ISEGNRHTSWTSMARSPLVRSRN 131
           IS+G RH  W S A   L+R R+
Sbjct: 237 ISKGKRHLPWVSPAIKRLMRKRD 259


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 312 GLSFDFTCTSQISVHFTTKHGT 247
           G    F C S ++VH ++KH T
Sbjct: 333 GCGLRFPCGSDLTVHMSSKHNT 354


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 42  DFTICSCISEGNRHTSWTSMARSPLVRSRNAFVLL 146
           D  +C C +  N  +S  S+  SP V  + A VLL
Sbjct: 688 DLKLCVCSARSNHTSSRISVNYSPNVIGKEAVVLL 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,886,464
Number of Sequences: 59808
Number of extensions: 168069
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)