Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31043
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    44   2e-05
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   3.0  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   3.0  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   3.0  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   3.0  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical ...    26   7.0  
Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interactin...    25   9.2  
U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interactin...    25   9.2  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 253 MLGGKVHGYLARAGKVKGQTPKV 321
           +LGGKVHG LARAGKV+ QTPKV
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKV 90


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 45   FTICSCISEGNRHTSWTSMARS 110
            F I  C   G  HT WT   RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 163 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKKN 11
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+    N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 163 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKKN 11
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+    N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 163 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKKN 11
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+    N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 163 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKKN 11
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+    N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 164 LHRQLQQEYECVP*SDQWTPGH*R-PGRVSIAL*YATAYCKI 42
           LH   ++E EC P   +    H + PGR S A  YA   C+I
Sbjct: 375 LHDGKRRESECAPCGSKALCAHHKLPGRTSAAEQYAEKNCEI 416


>Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical
           protein E03H4.6 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 160 IANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLH 53
           I N   +   FL     LL   V  VC  PS+++LH
Sbjct: 42  IRNTEVNVKRFLSSVFDLLTDPVCPVCEFPSNVELH 77


>AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical
           protein Y54H5A.2 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 50  NMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDED 166
           N+  H   +  H L       IGQ+   I+     GDED
Sbjct: 119 NVSRHFPDRVDHKLKARNANYIGQLLNEIKKSVETGDED 157


>Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical
           protein B0395.3 protein.
          Length = 614

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -1

Query: 139 TNAFLDLTNGLLAIDVQDVCRLPSDMQLHIV----KSYQPSLTSKK 14
           T  F+ +  G  A+D   +C  P + +LH +    KSY  S +SKK
Sbjct: 544 TRHFIQMCFGPSALDCYGICYNPQETELHFMISTFKSY-GSTSSKK 588


>U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interacting
           protein protein9, isoform b protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   LVSSFFYLSGLVDKILQYAVAYQRAI 78
           L SS +YLSGL+D+ L   V  + ++
Sbjct: 55  LESSLYYLSGLIDEGLSVVVDIENSL 80


>U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interacting
           protein protein9, isoform a protein.
          Length = 617

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   LVSSFFYLSGLVDKILQYAVAYQRAI 78
           L SS +YLSGL+D+ L   V  + ++
Sbjct: 359 LESSLYYLSGLIDEGLSVVVDIENSL 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,154,755
Number of Sequences: 27780
Number of extensions: 115822
Number of successful extensions: 275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)