Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31043
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 297 FTCTSQISVHFTTKHG 250
           FTC+ Q+ VH  T  G
Sbjct: 213 FTCSKQLKVHTRTHTG 228


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 241 PHSAMLGGKVHGYLARAGKVKG 306
           PH A    ++HGY +  G VKG
Sbjct: 609 PHKAFTY-RMHGYASVVGPVKG 629


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 58  VAYQRAIDTRPGRQWPG 108
           VA        PGR WPG
Sbjct: 906 VARSNVTPRSPGRAWPG 922


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 281 KYPCTLPPS 255
           K PCT PPS
Sbjct: 311 KMPCTQPPS 319


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = -2

Query: 300 DFTCTSQ---ISVHFTTKHGTV 244
           +F C +    I +HFTT H +V
Sbjct: 192 EFVCIATPEAIELHFTTDHPSV 213


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 161 HRQLQQEYECV 129
           H + Q+EY CV
Sbjct: 29  HAERQEEYRCV 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,935
Number of Sequences: 438
Number of extensions: 1273
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)