Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31043
         (322 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            42   1e-04
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    42   1e-04
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            42   1e-04
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   2.1  
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f...    26   6.5  
At4g05145.1 68417.m00771 hypothetical protein                          25   8.6  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +1

Query: 262 GKVHGYLARAGKVKGQTPKV 321
           GKVHG LARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +1

Query: 262 GKVHGYLARAGKVKGQTPKV 321
           GKVHG LARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +1

Query: 262 GKVHGYLARAGKVKGQTPKV 321
           GKVHG LARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 62   HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 160
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
           factor (HB-9) identical to HD-Zip protein GB:CAA71854
           GI:2145358 from [Arabidopsis thaliana]
          Length = 841

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 115 WSDQGTHSYSCCSWR*RPYSI 177
           W+D G  +YS  S R  PY++
Sbjct: 488 WADYGVDAYSAASLRATPYAV 508


>At4g05145.1 68417.m00771 hypothetical protein
          Length = 219

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 100 WPGVHWSDQGTHSYSCCSW 156
           W  V W    T  YS CSW
Sbjct: 52  WHKVIWFSHATPKYSFCSW 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,773,498
Number of Sequences: 28952
Number of extensions: 109255
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)