Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31042
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    27   2.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.2  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   8.2  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -1

Query: 315 LFGLWYSGYLVVTNWSRFGFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 136
           LF +  SGYL      + GF++++   TS GLT   ++G        GT    +  GI+K
Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442

Query: 135 LTAAK 121
             + K
Sbjct: 443 TNSWK 447


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 336 VFWGYIVLFGLWYSGYLVVTNW 271
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 410 RFPMLKQNLLILKWKNQLLSLKIPKLKYKLRSLNFKGGKT 529
           +F  +++ +  L+ K +L   KIP  KY  RSLN K  K+
Sbjct: 268 KFLAMQKEIKYLR-KRKLQIRKIPNYKYSDRSLNSKTPKS 306


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 533 GSGFQKVLRIKLALLPNMVKKID 601
           GSG+   L   L  L NMVKKID
Sbjct: 611 GSGYLSQLSEALPRLKNMVKKID 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,122
Number of Sequences: 5004
Number of extensions: 51230
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)