Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31042
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1277 + 25393012-25393530 31 0.70
07_03_1363 - 26022333-26023225,26023319-26023451 29 2.8
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 3.7
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 29 4.9
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 4.9
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 28 6.5
08_02_1167 + 24847689-24848156 28 6.5
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 28 6.5
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 6.5
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 28 6.5
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 28 8.6
>07_03_1277 + 25393012-25393530
Length = 172
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 300 YSGYLVVTNWSRFGFLSSVAAATSVGLTESSILGATSR-IG*AGTTSFSSATGIAKLTAA 124
Y G++V T S G+L+S A + G S L G AGT S G KL A
Sbjct: 81 YQGFIVGTGRSSPGYLTSATVAFTAGELNGSTLSLEGPFFGFAGTAERSIVGGTGKLRLA 140
Query: 123 KAMH 112
+ +
Sbjct: 141 RGYY 144
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 720 AGFGPQSPGNSRLT*GASAASEVLISGIAAAIA 622
AG GP +PG + G+S ASEV G A + A
Sbjct: 252 AGSGPATPGATESASGSSEASEVSYGGTALSAA 284
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 406 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEFQRRK 525
+E P AEA S + K EEP AA E +K E +A A + K
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAK 209
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 140 AMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEERKPNLLQLVT 283
A PV+E + A ++EV + DS+ P AT+E +L++ T
Sbjct: 179 AQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCT 226
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 424 EAKSADIKVEEPAAQPEDSKTE--VQATVAEFQRR---KNLWLRIPEGLAD*AGPPSQ 582
E++S DIK + +AQP +K E VQAT++ ++ K R P+G GP ++
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAK 451
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 68 RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAA 241
RRV+G +F LL+C AA A PVA + P+ +D +K + A
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLLKKYQDAL 278
Query: 242 ATEERKPNLLQLVT 283
+ + +Q+ T
Sbjct: 279 HGHKEVVSAMQVGT 292
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 397 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 498
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 173 PAQPILEVAPKIDDSVKPTEVAAATE 250
P P E PK+DD +P +VA +TE
Sbjct: 222 PLPPPSESPPKVDDDNEPPKVAGSTE 247
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 297 SGYLVVTNWSRFGFLSSVAAATSVGLTESSILGATSRIG*AG 172
+G+L + WS +G SS A + S+++G+T R+ AG
Sbjct: 95 AGHLSSSQWSVWGPASSTNAVIKGDTSSSAVVGSTGRVLLAG 136
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 321 IVLFGLWYSGYLVVTNWSRFGFLSSVAAATSVGLTESSIL 202
I+LFG + L + NW ++GF S + +GLT + L
Sbjct: 684 ILLFGGFIIPRLSMPNWLKWGFWISPLSYAEIGLTGNEFL 723
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 62 KRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVK 223
KR G + ++ LLLC+A AA + A+P A P P+ E+ + +V+
Sbjct: 96 KRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPC-PLRELLREYSAAVR 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,421,149
Number of Sequences: 37544
Number of extensions: 358268
Number of successful extensions: 1018
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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