Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31042
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 33 0.18
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 6.6
SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5) 28 8.8
SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2) 28 8.8
SB_24871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_10112| Best HMM Match : zf-TRAF (HMM E-Value=2.5) 28 8.8
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 409 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQ 516
E P EA+S D KVE P + E + EV+ATV E +
Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVE 57
>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -1
Query: 270 SRFGFLSSVAAATSVGLTESSIL----GATSRIG*AGTTSFSSATGIA 139
SR G SSV A+SVGL + L G SR G A S G+A
Sbjct: 412 SRVGLASSVGLASSVGLASRASLALRAGLASRAGLASRVGLPSCVGLA 459
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 270 SRFGFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 139
SR G +S A+ VG +S +G SR+G A + +S+ G+A
Sbjct: 388 SRVGLVSRAGLASRVG--RASRVGLASRVGLASSVGLASSVGLA 429
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 270 SRFGFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAKL 133
SR G +S A GL S +G SR+G A +S+ G+A L
Sbjct: 496 SRVGLVSRAGLALRAGLASS--VGLVSRVGLASRVGRASSVGLASL 539
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 270 SRFGFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 139
SR G S V + VGL +S +G SR+G A + +S G+A
Sbjct: 442 SRAGLASRVGLPSCVGL--ASRVGLASRVGLANSVGLASRVGLA 483
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 261 GFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 139
G S V A+ VGL S +G SR+G A + +S G+A
Sbjct: 457 GLASRVGLASRVGLANS--VGLASRVGLASSVGLASRVGLA 495
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 270 SRFGFLSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGI 142
SR G SSV A+ VGL +S +G SR G A +S+ G+
Sbjct: 478 SRVGLASSVGLASRVGL--ASRVGLVSRAGLALRAGLASSVGL 518
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 403 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQRRKNLWLRIPEGLAD*AGPPSQ 582
++E+P +A ++ + E PAA+PE + E +A V + + PE L + A P
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE------PEALNEKAEDPKD 640
Query: 583 HGE--EDRLWLPTVESD 627
E E++ +P E++
Sbjct: 641 EDETQEEKAEVPIDEAE 657
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 336 VFWGYIVLFGLWYSGYLVVTNWS-RFGFLSSVAAATSVGLTESSILGA 196
V W + F W+ VT+ FGF+ S A+A S+G + + GA
Sbjct: 564 VDWAQVQAFSKWFISQSAVTDQGVHFGFI-SYASAASIGFSFDADTGA 610
>SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 188 LEVAPKIDDSVKPTEVAAATEERKP 262
+E A +D SV PT+V A +ER P
Sbjct: 5 VEDASAVDTSVPPTDVTEAVDERPP 29
>SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5)
Length = 364
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 188 LEVAPKIDDSVKPTEVAAATEERKP 262
+E A +D SV PT+V A +ER P
Sbjct: 52 VEDASAVDTSVPPTDVTEAVDERPP 76
>SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2)
Length = 922
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 188 LEVAPKIDDSVKPTEVAAATEERKP 262
+E A +D SV PT+V A +ER P
Sbjct: 27 VEDASAVDTSVPPTDVTEAVDERPP 51
>SB_24871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 188 LEVAPKIDDSVKPTEVAAATEERKP 262
+E A +D SV PT+V A +ER P
Sbjct: 52 VEDASAVDTSVPPTDVTEAVDERPP 76
>SB_10112| Best HMM Match : zf-TRAF (HMM E-Value=2.5)
Length = 175
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 188 LEVAPKIDDSVKPTEVAAATEERKP 262
+E A +D SV PT+V A +ER P
Sbjct: 5 VEDASAVDTSVPPTDVTEAVDERPP 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,215,907
Number of Sequences: 59808
Number of extensions: 375065
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -