Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31042
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 30 1.4
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 30 1.9
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 30 1.9
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 30 1.9
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 30 1.9
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 28 5.8
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 28 5.8
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode asta... 28 7.7
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 253 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 345
E P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 253 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 345
E P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 400 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQRRKN 528
K+ E+ E ++++ +E + PE+ K + T AE+ R++
Sbjct: 1501 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1543
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 400 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQRRKN 528
K+ E+ E ++++ +E + PE+ K + T AE+ R++
Sbjct: 1480 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1522
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 412 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQRRKNLWLRIPEGL 555
IP+ E S +I VE + + TE++A V + + K+ + IP+ L
Sbjct: 454 IPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIENEKSRDIIIPQRL 501
>AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode astacin
protease protein 2 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 194 VAPKIDDSVKPTEVAAATEERKPNL-LQLVTTRYPLYQRPK 313
VAPK+ + K E+A +T+ K ++L+ T+ P ++ K
Sbjct: 15 VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,891
Number of Sequences: 27780
Number of extensions: 289187
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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