Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31041
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    24   0.75 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.3  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.0  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 343 NSIAEDYLLSGAESQQAEVRVAFGEIGSQPGAALRNQQGAARRGPA 480
           NS    ++LSGA+ Q+  + +AF         A ++  G+   GPA
Sbjct: 234 NSSITHWILSGADPQKLAIGIAFYGHAFTLVDASQHDLGSPSSGPA 279


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 187 GRQAGDHRDHRPRRQRTGDPRNPNLGAPGSE 279
           G+Q G   D R ++ RTG+ R  +  +  +E
Sbjct: 23  GQQHGPQSDSRNQQLRTGEKRKRSTSSQSTE 53


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 424 SQPGAALRNQQGAARRGPA 480
           S+PG +   +Q + R+GPA
Sbjct: 404 SKPGCSYTGEQKSRRKGPA 422


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 406 QREPLLAGTPPQITGN 359
           + EPLL+G   QI GN
Sbjct: 4   ETEPLLSGVVSQINGN 19


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 406 QREPLLAGTPPQITGN 359
           + EPLL+G   QI GN
Sbjct: 4   ETEPLLSGVVSQINGN 19


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 190 RQAGDHRDHRPR 225
           RQ  DHRD  PR
Sbjct: 249 RQCDDHRDRPPR 260


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 417 NRQPAGRRIAEPAGRREARTSRPHG 491
           N  PA +  +   G+R  R+ RP+G
Sbjct: 61  NLNPAVQGSSLTEGKRSKRSKRPNG 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,115
Number of Sequences: 336
Number of extensions: 2507
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)