Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31041
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.25
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 1.8
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 2.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 4.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.2
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 7.2
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 7.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.2
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 9.5
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 9.5
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 342 ELHSGRLPVIWGGVPASRGSRCVRRNRQPAGRRIAEPAGRREARTSRPHGA 494
E G L V W P G R R+ G R+ +GR +R+ PH A
Sbjct: 73 ERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEA 123
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 230 SAQETLATRTWAPP-APSSVRGTSAPSASCGNYSP 331
S L RT APP APS V+ P+A G SP
Sbjct: 21 STAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 310 ILRQLFPSFTQNSIAEDYLLSGAESQQAEVRVAFGEIGSQPG 435
++ LFP+ I+E+Y + A S+Q +V VA G +Q G
Sbjct: 355 LMSSLFPNSQGAQISEEYCVLNAPSKQGKVYVA-GITSNQHG 395
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 502 FGYAPCGLLVLASRRPAGSAMRRPAGCRF 416
F + PCG +V+A P+G G +F
Sbjct: 1095 FSFGPCGTIVMAFSTPSGLYTTSGKGTKF 1123
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 202 DHRDHRPRRQR--TGDPRNPNLGAPGSELSERNKR 300
D+RD PRR+R G R G GSE R +R
Sbjct: 20 DYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRR 54
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 245 LATRTWAPPAPSSVRGTSAP 304
++T T APP+PS +R AP
Sbjct: 81 ISTTTLAPPSPSPLRLNEAP 100
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 521 FVEFCDVWICAVRSAGPRLAAPCWFRNAAPGWLPISPNATRTSACWD 381
FV DV A P++AA RN G +P+ PN C+D
Sbjct: 294 FVFMIDVSYEASSKGLPKVAAEA-IRNILYGPVPLDPNVKIAIVCFD 339
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 543 QHSIES*LRRILRCLDMRRAVCWSSPRGALLVPQCGARLAADFAERNANLCL 388
Q+SI S CL+ + R L P + LA F+ NA++CL
Sbjct: 162 QNSIVSRTSNPFSCLNHSPRQIHKTVRNHLFSPPLPSNLALSFSISNASVCL 213
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 501 LDMRRAVCWSSPRGALLVPQCGARLAADFAERNANLCLLGL 379
L++ RA+C S PRG L+ + + N NL + G+
Sbjct: 231 LNVMRALCTSHPRGIHWRDSRSYLLSQEISYSNGNLLVRGI 271
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 266 PPAPSSVRGTSAPSASCGNYSP 331
PPAPS+++ +PS + +Y P
Sbjct: 317 PPAPSTLQFNPSPSPAAPSYPP 338
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 436 AALRNQQGAARRGPADRTAHIQTSQNSTKLTLD 534
+AL N+ ARR + RT+ +S N+ T+D
Sbjct: 17 SALPNRTNTARRSTSPRTSTGSSSTNTNTKTVD 49
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 345 LHSGRLPVIWGGVPASRGSRCVRRNRQPAGRRIAEP 452
++S R V+ G P G++ + +PA +++A+P
Sbjct: 481 VNSSRQRVVPGATPVIDGNKKNNKKTKPAVKQVAQP 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,739
Number of Sequences: 5004
Number of extensions: 38881
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -