Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31041
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11) 29 2.5
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 28 4.3
SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47947| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2) 27 7.5
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013) 27 7.5
SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_57682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
Length = 1140
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 509 CDVWIC-AVRSAGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
C + C S R P W R AP +SP+AT+ +AC+D+A
Sbjct: 835 CGLLSCPTTTSPAKRRKTPSW-RTLAPA---LSPSATQPAACYDAA 876
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 473 PRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
P L P W R AP +SP+AT+ +AC D+A
Sbjct: 1943 PELKTPSW-RTLAPA---LSPSATQLAACCDAA 1971
>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 509 CDVWIC-AVRSAGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
C + C S R P W R AP +SP+AT+ +AC+D+A
Sbjct: 103 CGLLSCPTTTSPEKRRKTPSW-RTLAPA---LSPSATQPAACYDAA 144
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 200 PACRPQGQAGGSVPGQGPRAP 138
P RPQ GG+VP + P+AP
Sbjct: 1072 PTKRPQSPVGGAVPTKRPQAP 1092
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 200 PACRPQGQAGGSVPGQGPRAP 138
P RPQ GG+VP + P+AP
Sbjct: 1098 PTKRPQAPVGGAVPTKRPQAP 1118
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 200 PACRPQGQAGGSVPGQGPRAP 138
P RPQ GG+VP + P+AP
Sbjct: 596 PTKRPQSPVGGAVPTKRPQAP 616
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 200 PACRPQGQAGGSVPGQGPRAP 138
P RPQ GG+VP + P+AP
Sbjct: 622 PTKRPQAPVGGAVPTKRPQAP 642
>SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 280 LSERNKRTIGILRQLFPSFTQNSIAEDYLLSGAESQQAEVRVAFGEIGS 426
++ER+K + G +FP F +S+ YL+SGAES V A G G+
Sbjct: 40 VNERSKES-GKRSPVFPPFIHSSV---YLVSGAESGAVRVWQARGPQGA 84
>SB_47947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 271 GSELSERNKRTIGILRQLFPSFTQNSIAEDYLLSGAESQQAEVRVAFGEIGSQPGAALRN 450
GSE+++ + T L ++ +F NS+ ++ ++ V + +P AAL N
Sbjct: 133 GSEITDETE-TKNTLPEVITAFPSNSLPSSLPITHSD-HVFHVDFELSKAAQEPSAALNN 190
Query: 451 QQGAARRGPADRTAHI 498
G G + +H+
Sbjct: 191 SNGEDSFGASSTRSHV 206
>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
Length = 542
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 482 SAGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSAPDNR*SSAMEFCVKEGNSCRRMPM 303
S P +AA + +A+ PIS N T CW+ R SS + K G + RR+
Sbjct: 128 SPPPGVAAYAFASHASVLVTPISANITGLRNCWEGR-SVRASSLLRQLAKGGCAARRLSW 186
Query: 302 V 300
V
Sbjct: 187 V 187
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 509 CDVWIC-AVRSAGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
C + C S R P W R AP +SP+AT+ +AC D+A
Sbjct: 680 CGLLSCPTTTSPAKRRKTPSW-RTLAPA---LSPSATQPAACCDAA 721
>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 160 GTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGA-PGSELSERNK 297
G PPA P A +D RRQR P N NLG P S+ + R++
Sbjct: 447 GVTPPARPPLAAAQQTKDLPFRRQRFALPDNANLGCYPWSKQTFRHE 493
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 509 CDVWIC-AVRSAGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
C + C S R P W R AP +SP+AT+ +AC D+A
Sbjct: 1599 CGLLSCPTTTSPAKRRKTPSW-RTLAPA---LSPSATQLAACCDAA 1640
>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
Length = 406
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 151 PCPGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKRTI 306
P GT R D RP+RQ++GD + + P LS KR I
Sbjct: 278 PDRGTTSSPDQQARDGSQEADSRPQRQKSGD-QTDSSNKPQRTLSASEKRAI 328
>SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 308 PMVRLFLSLSS--EPGAPRFGLRGSPVRWRR 222
P V+ F +LS EP P + RGS +RW++
Sbjct: 47 PGVKSFTTLSQAVEPPRPEYERRGSLMRWKK 77
>SB_57682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 479 AGPRLAAPCWFRNAAPGWLPISPNATRTSACWDSA 375
A R P W R AP +SP+AT+ +AC D+A
Sbjct: 57 AAKRRKTPSW-RTLAPA---LSPSATQLAACCDAA 87
>SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 483 VCWSSPRGALLVPQCGARLAADFAERNANLCLLGLRPR*QVIFRY 349
VC + + + G+ A A +NANLC+ GL ++F +
Sbjct: 238 VCVALDQSGAVAIGYGSDQACWIANKNANLCIFGLPVALMILFNF 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,189
Number of Sequences: 59808
Number of extensions: 367051
Number of successful extensions: 1182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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