Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31041
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    32   0.31 
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    30   0.94 
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    29   2.9  
AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
            protein protein.
          Length = 1439

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 230  SAQETLATRTWAPPAPSSVRGTSAPSASCGNY 325
            +A   +  R W  P PS+    S  SA CGNY
Sbjct: 1069 TAPAAVNPRGWTQPTPSNTSAASVESAFCGNY 1100


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
            C04D8.1 protein.
          Length = 1317

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 230  SAQETLATRTWAPPAPSSVRGTSAPSASCGNY 325
            +A   +  R W  P PS+    S  SA CGNY
Sbjct: 947  TAPAAVNPRGWTQPTPSNTSAASVESAFCGNY 978


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 199 GDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKR 300
           G+HR+HR  ++   D R+ +  +  SE SER+ R
Sbjct: 301 GEHREHREHKEHRRDDRHRSERSERSERSERSDR 334


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 196  AGDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKRTIGILRQLFP 330
            +G H D    R+R  DP+     +P S+ S+ +    G  RQ  P
Sbjct: 867  SGSHEDPTAARERLDDPQGLRESSPSSDESDSSSEAPGSPRQQDP 911


>AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical
           protein Y73C8B.1 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 366 VIWGGVPASRGSRCVRRNRQPAGRRIAEPAGRREARTSRPHGAYPNIAEFYE 521
           +I G       +     NR+P G  +  P G R  + SRP G   ++  F++
Sbjct: 121 IIMGHSRGCESALITATNRKPHGLVMVNPTGLRIHKGSRPKGKLESLVYFHK 172


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 190 RQAGDHRDHRPRRQRTG--DPRNPNLGAPGSELSERNKRTI 306
           ++ G H DH  R +R G  DP +PN+   G   + R KR+I
Sbjct: 109 KKHGTHVDHHGRVRRNGDHDPNDPNVDHTGH--NHRVKRSI 147


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 181  PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSE 279
            P  R     R   PRRQ+ G  R PN    GS+
Sbjct: 1156 PSPRAVNSSRSTSPRRQQPGSMRRPNNHHSGSQ 1188


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 181  PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSE 279
            P  R     R   PRRQ+ G  R PN    GS+
Sbjct: 1156 PSPRAVNSSRSTSPRRQQPGSMRRPNNHHSGSQ 1188


>U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical
           protein F42A10.5 protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 230 SAQETLATRTWAPPAPSSVRGTSAPSASCGNYSPPSRR 343
           SA      R    PAP++    S+ +A  G+Y PP  R
Sbjct: 232 SAANPAPARNEPAPAPAAAAPASSGAAKAGSYVPPHLR 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,637
Number of Sequences: 27780
Number of extensions: 259127
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)