Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31041
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   4.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 263 APPAPSSVRGTSAPSASCGNYSPPSRRTP 349
           A P PS          SC   SPP R+TP
Sbjct: 372 AIPEPSKNPAMGHWQMSCVACSPPPRQTP 400



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 465 EARTSRPHGAYPNIAEFY 518
           EART  P   YP   +F+
Sbjct: 262 EARTDLPKVPYPTALDFF 279


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -1

Query: 478 LVLASRRPAGSAMRRPAGCRFRRTQREPLLAGTP--PQITGNLP 353
           LV A R PAG  +   AG           ++G P  P + G++P
Sbjct: 397 LVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 166 EPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGAP 270
           +P +   G Q   H+   P+  + G P NP+ G P
Sbjct: 15  QPSSGAPGPQPSPHQS--PQAPQRGSPPNPSQGPP 47


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 199 GDHRDHRPRRQRTGDPRNPNLGAPGSEL 282
           GDH DH P++       +P   + G  L
Sbjct: 278 GDHGDHAPKQTVRFKVHDPKAHSKGGTL 305


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 199 GDHRDHRPRRQRTGDPRNP 255
           G  RDH  +R+ TG  R P
Sbjct: 2   GISRDHWHKRRATGGKRKP 20


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 108 SDLLIMILGYYLQLSI 61
           SDLL +ILG   +LS+
Sbjct: 78  SDLLFLILGLPFELSV 93


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 76   IVPENHDEKVTLP 114
            I P+NH+EK+ +P
Sbjct: 1477 INPDNHNEKLHIP 1489


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 449 FRNAAPGWLP 420
           F NAAP W+P
Sbjct: 22  FVNAAPDWVP 31


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 449 FRNAAPGWLP 420
           F NAAP W+P
Sbjct: 22  FVNAAPDWVP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,513
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)