Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31041
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01280.1 68418.m00037 expressed protein                             29   2.7  
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof...    28   3.5  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    28   4.6  
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ...    27   6.1  
At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY) domain-c...    27   8.1  
At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I ...    27   8.1  

>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 230 SAQETLATRTWAPPAPSSVRGTSAPSASCGNYSPPSRRT 346
           S+  T +TR+W+ P+ SS  GTS  + +    + P+  T
Sbjct: 129 SSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTST 167


>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 664

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 503 VWICAVRSAGPRLAAPCWF-RNAAPGWLPISPNATRTSA-CWDSAPDNR*SSAMEFCVK 333
           +W+  VR+A   LA  CWF  N  P    I  +A  T   C +   +N+   +++F  K
Sbjct: 207 MWMLMVRTAKTELARECWFVVNGVPIRYSIREHALLTGLNCREYPKNNKTLGSLKFVEK 265


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -3

Query: 434 PGWLPISPNATRTSACW----DSAPDNR*SSAMEFCVKEGNSC 318
           P   P SP+ T TSA W     S PD     AM F    G  C
Sbjct: 251 PPMAPPSPSVTPTSAYWCVAKPSVPDPIIQEAMNFACGSGADC 293


>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 447

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 PCPGTEPPA*PCGRQAGDHRDHRPRR 228
           PC GT   + PCG  +GD R  R +R
Sbjct: 275 PCNGTGEISKPCGACSGDGRVRRTKR 300


>At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 447

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 GSELSERNKRTIGILRQLFPSFTQNSIAEDYLL 369
           G E SERNK+ I I +   PS     + ++YLL
Sbjct: 204 GYESSERNKQQIAIEKISIPSNMSLGLVKNYLL 236


>At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I
           GI:3399767 from [Arabidopsis thaliana]; contains Pfam
           profile PF02298: Plastocyanin-like domain; identical to
           cDNA uclacyanin I GI:3399766
          Length = 261

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 262 GAPGSELSERNKRTIGILRQLFPSFTQNSIAEDYLLSGAESQQAE 396
           G+PGS  S  + +T+G     FPS T  + A+   L+GA+S  A+
Sbjct: 201 GSPGSSSSTTSTKTVG----TFPSSTTGTTAD---LAGADSPPAD 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,728,898
Number of Sequences: 28952
Number of extensions: 240392
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)