Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31040
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.17 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.93 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   3.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.6  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 303 RNGKVRCERLLTFLQARLASASVMIPRQTTFSNVTRFLINTDENKCVCWXECGEILVVA 127
           RNG  R    + F+   LA + + I    T ++V  F+I  + +    +  CG +++VA
Sbjct: 481 RNGMYRPS--IYFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVA 537


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 414 NNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTF 313
           + L++ YL + G L + N V I+  KT  D+TTF
Sbjct: 421 SGLAWLYLNNEGSL-VYN-VQIENLKTTPDNTTF 452


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 303 RNGKVRCERLLTFLQARLASASVMIPRQTTFSNVTRFLINTDENKCVCWXECGEILVVA 127
           RNG  R    + F+   LA + + I      ++V  F+I  +      +  CG +++VA
Sbjct: 481 RNGMYRPS--IYFISKTLAESPIFIIIPVILTSVCYFMIGLNSQGFRFYIACGIMILVA 537


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 270 TFLQARLASASVMIPRQTTFSNVTRFLINTDENKC 166
           TFL   L   ++ +  + + S +  +  NTDE  C
Sbjct: 7   TFLAIWLYLTAIYVSSRKSDSGIWYWQCNTDEETC 41


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 320 VSSLTVLYFCIYTGL 364
           V ++ VLY C YT L
Sbjct: 172 VQAIEVLYICSYTVL 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,728
Number of Sequences: 336
Number of extensions: 1340
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)