Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31040
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 62 4e-11
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 62 4e-11
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.53
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 2.9
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 3.8
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.6
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 6.6
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 24 8.7
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 24 8.7
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 8.7
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 62.1 bits (144), Expect = 4e-11
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 99
+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 205 SELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 62.1 bits (144), Expect = 4e-11
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 99
+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 206 SELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.53
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -2
Query: 375 LDICNPV*IQKYKTVKDDTTFNFRRNGKVRCERLLTFLQARLASASVMIPRQTTFSNVTR 196
L++ +P I Y TT +R L + L + SV+I +TFS V+R
Sbjct: 3 LELLDPFSIPDYPEALT-TTLKHGHATSIRFSTNGYHLASGLVNGSVVIWDLSTFS-VSR 60
Query: 195 FLI-NTDENKCVCWXECGEILVVAA 124
L +T + VCW C L+ A+
Sbjct: 61 VLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 207 SRTSSGAVSSPKPTRASLVKMLKVVRSGP 293
S S + PKP ASL+K K+ +S P
Sbjct: 188 SEAISQFLEKPKPKTASLIKAYKMAQSTP 216
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 429 RNRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 292
RN+ + + L SS DIC + Y DD F F +N K
Sbjct: 122 RNQFYIRFCLELLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -2
Query: 426 NRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFN 310
N+ +N+S+ Y+Y + + D N ++K++ +D +T N
Sbjct: 202 NKALSNISFNYVYYTLENDSENINEVKKFEDEEDTSTPN 240
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/95 (16%), Positives = 43/95 (45%)
Frame = -2
Query: 375 LDICNPV*IQKYKTVKDDTTFNFRRNGKVRCERLLTFLQARLASASVMIPRQTTFSNVTR 196
+++C + + T+ +FR ++ +R++ ++ ++ + + R +
Sbjct: 4446 IELCEQLRLILEPTLATKMQGDFRTGKRLNMKRIIPYIASQFKKDKIWMRRVKPSKRTYQ 4505
Query: 195 FLINTDENKCVCWXECGEILVVAALGRLVAIALSV 91
+I+ D++K + E G ++ LV ALS+
Sbjct: 4506 VMISIDDSKSM--SESGSTVLALETLALVTKALSL 4538
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 225 AVSSPKPTRASLVKMLKVVRSGPY 296
+VSSP+ + +LKV+ S PY
Sbjct: 346 SVSSPEKKESPATHLLKVIGSSPY 369
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 83 GRQTLKAMATSLPRAATTNISPHSXQHTHLFS 178
GR++ + A +L T N P S QH FS
Sbjct: 81 GRRSRASFARALQDPQTPNTPPVSSQHRRFFS 112
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 28 SYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGDN*YL 144
S ST QLLR N ++ ++ G+EP + G +L
Sbjct: 160 SLPKSTSFSQLLRANSYIYRANVAFTGNEPLQVGPTFFL 198
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 353 KYRNTKPSKMTQHLILDGTVRSAAN 279
K R KP K++QHL+L+ + N
Sbjct: 161 KDRVLKPEKLSQHLLLNSPIDPLKN 185
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 399 KYLYSSG-QLDICNPV*IQKYKTVKDDTTFNFRRNGKV 289
KYL G Q D+ K K +K ++ FN+ RNG+V
Sbjct: 97 KYLNEGGKQGDVGITKPHTKTKKLKSNSIFNYVRNGEV 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,944
Number of Sequences: 5004
Number of extensions: 22548
Number of successful extensions: 62
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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