Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31040
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 69 2e-12
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 68 4e-12
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 68 4e-12
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 66 1e-11
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 64 3e-11
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 63 1e-10
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 60 7e-10
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 44 4e-05
04_04_1588 - 34633057-34633824 29 2.1
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 28 2.8
08_02_0201 + 14200684-14201412 27 6.4
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 27 8.5
03_06_0767 + 36126254-36126264,36126676-36126769,36127068-361273... 27 8.5
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 114
+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 215 SELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 67.7 bits (158), Expect = 4e-12
Identities = 33/42 (78%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 123
+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 205 SELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 67.7 bits (158), Expect = 4e-12
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 114
AELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 210 AELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 65.7 bits (153), Expect = 1e-11
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 114
+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 188 SELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 64.5 bits (150), Expect = 3e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 114
+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 211 SELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/31 (90%), Positives = 31/31 (100%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 93
+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 429 SELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 60.1 bits (139), Expect = 7e-10
Identities = 28/44 (63%), Positives = 33/44 (75%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 132
AEL +L+E++YKDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 195 AELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 1 AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 102
AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 184 AEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 171 KCVCWXECGEILVVAALGRLVAIALSV*RPK 79
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 168 CV-CWXECGEILVVAALGRLVAIALSV*RPK 79
CV CW C L+VAAL A AL + +PK
Sbjct: 22 CVLCWCCCFLFLIVAALAGAAAYALFLYKPK 52
>08_02_0201 + 14200684-14201412
Length = 242
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 168 CVCWXECGEILVVAALGRLVAIALSV*RPK 79
C+CW C +L+V A+ A L RPK
Sbjct: 55 CLCWCCCFLLLLVVAVAATSAYLLYACRPK 84
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 198 RFLINTDENKCVCWXECGEILVVAALG 118
RF++ D++ C+C EC + V A+G
Sbjct: 34 RFVMG-DKHCCICKTECSSVFVTKAMG 59
>03_06_0767 +
36126254-36126264,36126676-36126769,36127068-36127315,
36127391-36127647,36127949-36127998,36128056-36128286,
36128851-36128928,36129315-36129441,36129520-36129629,
36130003-36130152,36131106-36131183,36131293-36131421,
36131502-36131699,36132199-36132342
Length = 634
Score = 26.6 bits (56), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 189 INTDENKCVCWXECGE 142
++T+E C+CW E GE
Sbjct: 522 VHTNEVNCICWDEKGE 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,604,486
Number of Sequences: 37544
Number of extensions: 140909
Number of successful extensions: 447
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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