Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31040
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   1e-11
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      59   2e-09
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 29   1.6  
SB_35317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_33792| Best HMM Match : Ank (HMM E-Value=2.3e-15)                   27   5.0  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 31/39 (79%), Positives = 35/39 (89%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 114
           AELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 271 AELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 30/46 (65%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 132
           AELDTL+ED YKDSTLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 182 AELDTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +1

Query: 1   AELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 114
           A LD L ++SYKDSTLIMQLLRDNLTLWTS+   +G +
Sbjct: 209 AVLDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 4   ELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 126
           + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 855 DTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_35317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 TEADASLACKNVKSRSQRTLPFRLKLNVVSS 328
           T A A LAC  V SR      F LKL +V+S
Sbjct: 45  TTASAKLACLQVDSRGSPKEEFSLKLPMVNS 75


>SB_33792| Best HMM Match : Ank (HMM E-Value=2.3e-15)
          Length = 202

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 351 IQKYKTVKDDTTFNFRRNGKVRCERLLTFLQARLASASVMIPRQTTFSNVTRFLINTDEN 172
           ++K  + K +     RRN + R       LQ RL S+S  + R+T    + + + N D N
Sbjct: 5   VKKQISTKTNIDKKCRRNQRKRPPTFPVDLQVRLQSSSSPMDRETITKRLKKLMKNQDIN 64


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 237 VMIPRQTTFSNVTRFLINTDENKCVCWXECGEIL 136
           V    ++++ NVT  + + + N  +CW +C ++L
Sbjct: 543 VYAEHRSSYLNVTAIVKSFENNPVLCWLKCLDVL 576


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,310
Number of Sequences: 59808
Number of extensions: 176494
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)