Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31040
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 426 NRNFNNLSYKYLYSS 382
           N N+NN +YKY Y++
Sbjct: 321 NYNYNNNNYKYNYNN 335


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 426 NRNFNNLSYKYLY 388
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 426 NRNFNNLSYKYLY 388
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 426 NRNFNNLSYKYLY 388
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 ENVVWRGIITEADASLACKNVKSRSQRTL 295
           E++  +  ITE D S  CK++ S  +  L
Sbjct: 162 ESIQRKSDITELDVSKRCKDLASFMENLL 190


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 ENVVWRGIITEADASLACKNVKS 277
           E++  +  ITE D S  CK++ S
Sbjct: 456 ESIQRKSDITELDVSKRCKDLAS 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,607
Number of Sequences: 438
Number of extensions: 1535
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)