Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31039
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    31   0.15 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    29   0.62 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.5  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    27   3.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   5.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   5.8  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    26   7.7  

>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 638 PFIYFSSMWIRLKLRVIIYVFHRIRILVMIA-MATHVACLQLGKKNLFGKEKIPLPQG 808
           PF+   + WI  K+    ++ H+IR ++ +A +     C     ++ F K KI +P+G
Sbjct: 363 PFMIGDTEWISCKVHGQSFMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKG 420


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 626 FVFTPFIYFSSMWIRLKLRVIIYVFHRIRILVMIAMATHVACL 754
           FV  P+IYFS    +  +     +F  + I V ++ AT +AC+
Sbjct: 193 FVIAPYIYFSVRCFKKNVNNPKDIFLHLCIFVSVSFATVLACI 235


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 172 ILLGYFKCVMDRGPCTKDGKTFKRALPEHCRQRVR 276
           +LL  ++CV    PCTK+G  F  A+ +  R  VR
Sbjct: 224 VLLNGYECV----PCTKNGTGFVHAIMDTFRHHVR 254


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 172 ILLGYFKCVMDRGPCTKDGKTFKRALPEHCRQRVR 276
           +LL  ++CV    PCTK+G  F  A+ +  R  VR
Sbjct: 224 VLLNGYECV----PCTKNGTGFVHAIMDTFRHHVR 254


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -1

Query: 735 AIAIMTKIRILWNTYIITRNFNRIHIDEK*INGVKTKHQSINKRLTEFENRNSMFFITIF 556
           A A+   IR ++   II  ++ +++  EK  + +   HQ + +RL +   +N   +I + 
Sbjct: 70  AHALTRSIRTVYTASIIAADY-KLNFSEKKADKIDALHQRVAQRLFKTIYKNGGLYIKMG 128

Query: 555 IRIYCQSN 532
             I  QSN
Sbjct: 129 QIIAMQSN 136


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 117 ELSQKRQYQHQRYLTKRPDPARLF*MRHGQGTVHE-RWKNLQACSSGALPTACARCSNKQ 293
           EL    + +  + LT+  DPAR+F  R  +G V +    N Q  ++  + T   R  +  
Sbjct: 303 ELQVLLESKRVQKLTEEYDPARMFLARWAEGIVEQSESNNSQPVNNAGVWTDAQREEDSS 362

Query: 294 KAAFRTLLLAIRA-RSEPSFLE 356
              F  + +  R  R +P  +E
Sbjct: 363 LGPFELVYIEERVKRDDPLSVE 384


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 647  YFSSMWIRLKLRVIIYVFHRIRILVMIAMATHVACLQLGKKNLFGKEKIPLP 802
            Y S  WI    R+  + +HR+RI  M A     A   L K  LF +  IP+P
Sbjct: 1047 YDSLSWISNIKRIREFRYHRLRIRRMTAWPESDA---LDKHILFKENIIPIP 1095


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 727 SNGHTRGVPSIREKKPFWEGKNSITPGVFPK 819
           S+ +++GV S    +  WE  N+  P V P+
Sbjct: 307 SSSYSKGVNSAASLQSIWETMNNSNPSVIPE 337


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 716 LVMIAMATHVACLQLGKKNLFG 781
           LVMI + TH+ C+ +G+   +G
Sbjct: 166 LVMIGVCTHLGCVPIGEAGDYG 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,435
Number of Sequences: 5004
Number of extensions: 75583
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)