Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31037
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073...    29   2.2  
12_02_0759 - 22882435-22882731                                         28   5.0  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   6.7  
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839...    27   8.8  

>10_08_1040 +
           22503641-22503681,22503838-22504299,22506952-22507361,
           22507484-22507640,22507718-22507937,22508053-22508106,
           22508193-22508272,22508359-22508636,22509193-22509515,
           22509590-22509853,22510453-22510860
          Length = 898

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -2

Query: 449 DVFLYKRSTRVSTRISATESSITSEAQTXAARQGRVHHRDRVHQKSVRRQGKCCLQKGHL 270
           ++F  KR + VS + ++   +     Q    R  +V    + H K     G C +  G +
Sbjct: 736 EIFRVKRRSGVSVKPASDAKTSNLSDQQVLRRLKKVRPEIQQHNKRPEDYGHCSVPSGRM 795

Query: 269 GIQNDTNSNSS 237
            ++N  NS+SS
Sbjct: 796 SMKN-LNSSSS 805


>12_02_0759 - 22882435-22882731
          Length = 98

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = -2

Query: 428 STRVSTRISATESSITSEAQTXA-------ARQGRVHHRDRVHQKSVRRQG 297
           S R+ST  SA  S+  S  Q          AR+GR H R  + ++  RR+G
Sbjct: 7   SIRISTASSAATSAPASNRQLATDPFTQRGAREGRTHERHHLVERGQRRRG 57


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +1

Query: 76  GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 189
           G +     T   L+W+ P+WL   W M  AA N+    AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452


>04_04_1285 -
           32382614-32382720,32383032-32383710,32383816-32383926,
           32384007-32384065,32384163-32384271,32384387-32384575,
           32384650-32385476,32385501-32385633
          Length = 737

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 491 SSYPCCAXPQKHFKIIFIKAPXPPNSYCPHNFYPTT 598
           SSYP  + P +H   I +  P  PN Y  H+ YP T
Sbjct: 581 SSYP--SNPTQHQ--IHLNYPSTPNQYQSHSTYPNT 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,768
Number of Sequences: 37544
Number of extensions: 218160
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)