Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31037
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.059
SB_8803| Best HMM Match : Ras (HMM E-Value=7.9e-30)                    28   5.1  
SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  27   9.0  

>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = +1

Query: 271 RWPFWRQHFPXXXXXXXXXXXXXXXXXXXAAXV*ASEVMLDSVADMRVDTLVLLLYRNTS 450
           RW FW    P                    A + A +V  +   D++V  L  LL  NTS
Sbjct: 232 RWVFWIAAIPGFVVGALIVFTLKEPVKGEQAPMQARKVFTNKTQDIKVSKLTRLLVANTS 291

Query: 451 MFTYLPQNQLSKDFLVSL 504
           MF+   QN +SK  ++ L
Sbjct: 292 MFS---QNLVSKSAVIKL 306


>SB_8803| Best HMM Match : Ras (HMM E-Value=7.9e-30)
          Length = 517

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 130 VWLWPMAALNLQWDTATP----LPEVTQEASALPLSAADTELLLLVSFWIPRWPFW 285
           V L+    L L W   TP    LP  T  +     SA     ++LV+F +PR P+W
Sbjct: 256 VSLYTATILKL-WRRTTPGRYGLPTPTSYSEKANRSAVKMLTIVLVTFAVPRIPYW 310


>SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 249

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 428 STRVSTRISATESSITS-EAQTXAARQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDT 252
           S  +   + A ES++T  +A T    + +VH  +R  +K      +   + G+LG   DT
Sbjct: 17  SEEMENHVPADESTVTDPQASTDDTAKKKVHPDERSSRKYAIPIAELTTEMGYLGFCRDT 76

Query: 251 NSNSSVS 231
                +S
Sbjct: 77  LHYKDIS 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,380
Number of Sequences: 59808
Number of extensions: 229224
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)