Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31037
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +3

Query: 462 PPPEP---VEQRLPRIPAVLHPR 521
           PPPEP   VE+ LP+ P V  PR
Sbjct: 20  PPPEPAPVVEETLPQAPVVAEPR 42


>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 409 RVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSLLCXTPETFQDHLHQGPXSS 561
           R DTL L   +N+   T  P NQ+S + L SLL  +  T    L   P SS
Sbjct: 12  RKDTL-LTFAKNSITSTMFPSNQISLNALNSLLYGSINTSPQPLLSSPTSS 61


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 WYSPVWLWPMAALNLQWDTATPLP 189
           W   +W++PMA + L W   T LP
Sbjct: 98  WNQLLWIYPMALVQLIWVPDTELP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,751,712
Number of Sequences: 27780
Number of extensions: 171048
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)