Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31037
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 429 PLVQKHIYVH 458
           PL+QKH+ +H
Sbjct: 317 PLIQKHLKIH 326


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 453 VHVPPPEPVEQRLPRIP 503
           V++P P P   RL R P
Sbjct: 104 VYIPQPRPPHPRLRREP 120



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 453 VHVPPPEPVEQRLPRIP 503
           V++P P P   RL R P
Sbjct: 130 VYIPQPRPPHPRLRREP 146


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 452 CSRTSPRTS*AKTSSYPCCAXPQKHFKI 535
           CS+TS   S  +T S  C      H K+
Sbjct: 365 CSQTSVHYSNGQTHSQLCPTPRSTHLKV 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,085
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)