Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31037
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64960.1 68414.m07363 expressed protein                             29   3.2  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    28   5.6  
At3g27400.1 68416.m03425 pectate lyase family protein similar to...    27   7.4  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    27   9.7  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    27   9.7  

>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 382 VMLDSVADMRVDTL-VLLLYRNTSMFTYLPQNQLSKDFLVSLLCXTPETFQDHLHQGPXS 558
           +MLDSV  +RV  + +LLL R+   F +     +S D L+S+L        D  H     
Sbjct: 480 LMLDSVTSVRVAMVDLLLLIRDVRAFQF--NTVVSLDVLLSVLA------SDQTHVAKGI 531

Query: 559 SQFLLPP*FLSNHKTE 606
           ++ L+P  F S  + E
Sbjct: 532 ARLLIPSYFPSRKRAE 547


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 459 VPPPEPVEQRLPRIPAVLHPRNIXXXXXXXPQXLPILTAPIISIQP 596
           +PPP+      P++P   HP+ +       P  LP    P+IS  P
Sbjct: 157 MPPPQVPVMPPPQVPVKPHPK-VPVISPDPPATLPPPKVPVISPDP 201


>At3g27400.1 68416.m03425 pectate lyase family protein similar to
           pectate lyase GP:7547009 from [Vitis vinifera]; contains
           Pfam profile: PF00544 pectate lyase
          Length = 412

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 437 YKRSTRVSTRISATESSITSEAQTXAARQGR 345
           Y R++ +S R S+   SIT+ A T + R+GR
Sbjct: 380 YARASSLSARPSSLVGSITTTAGTLSCRRGR 410


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 458 VNIDVFLYKRSTRVSTRISATESSITSEAQTXAARQGRVHHRDRVHQKSVRRQG 297
           VN+++   KR  RVS R   +  ++  EA+  +  QG+    D +  + +R  G
Sbjct: 302 VNVEIGAKKRKHRVSRRTGNSAPAVEKEAE--SLHQGKRKGPDLLENRGLRSNG 353


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 444 HIYVHVPPPEPVEQRLPRIPAVLHP 518
           H+Y   PP +P    +P  P++ HP
Sbjct: 52  HLYQAAPPQQPQTSPVPPHPSISHP 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,428
Number of Sequences: 28952
Number of extensions: 165316
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)