Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31033
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    27   4.2  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    26   5.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   7.3  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.7  

>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 258 SINFIQTYYYSVSEKPFHLNMLDDTYIISMQT 163
           SI  I T+YY  +EK  HL   D    IS+ T
Sbjct: 80  SIRDITTHYYHFAEKMLHLISDDSLVQISLNT 111


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 321 NSKFVQITTNAKRYLFTILYGSINFIQTYYYSVSEKPFHLNMLDD 187
           N  F+ +  NA    F+ L   +NF  T+Y S  E P+ L  L +
Sbjct: 10  NKTFISVRLNA----FSCL-AELNFRHTWYCSKKETPYQLERLQE 49


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 640 TFSNSLVELSPNQLYESRMAIGMVFKI 720
           +F+ SL E   N +YE+R A+G++  I
Sbjct: 369 SFNTSLGEFISNGIYEARKALGLLTPI 395


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 330 WVANSKFVQITTNAK 286
           W  N+KF+QI TNA+
Sbjct: 284 WSPNAKFIQIDTNAE 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,688
Number of Sequences: 5004
Number of extensions: 67568
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)