Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31033
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    30   2.3  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm recep...    29   3.0  
U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical
           protein F08B12.2 protein.
          Length = 359

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +2

Query: 53  KMVKKGLSFAYIMNVICFISRWLYHQIGLIL*HL 154
           K VK  L  AYI+N     S WLY   G+IL HL
Sbjct: 170 KAVKSALQLAYILNRSSIHSPWLYFS-GVILKHL 202


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = -3

Query: 327 VANSKFVQITTNAKRYLFTILYGSINFIQTYYYSVSEKPFHLNMLDDTYIISM 169
           V +S+F+ I T ++  +F ++Y  ++    Y+Y+ + +P HL +    Y+  +
Sbjct: 296 VDSSEFLYIVTISQA-VFIVVYPVLSLSMRYFYAETYRPVHLTIATLVYVFDI 347


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 97  YLFYQ*MALSPNWPNFMTFTLLCLHRYYVSIIKHIQMKWFFRYRIVICLYKVN 255
           ++++   +L   +P F  F +L    +Y+ I+  I +++ FRY     LYK N
Sbjct: 73  FVYFSLNSLIQEYPYFFQFAILLYASFYIVILAIIAVQFAFRYS---TLYKPN 122


>U80023-11|AAG24044.1|  331|Caenorhabditis elegans Seven tm receptor
           protein 47 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +1

Query: 142 FMTFTLLCLHRYYVSIIKHIQMKWFFRYRIVI 237
           F+  T++    +Y+ ++ HI +++ FRY +++
Sbjct: 88  FLKLTMIFYSSFYIVMLSHISVQFLFRYLVLV 119


>U67953-1|AAQ91892.1|  398|Caenorhabditis elegans Hypothetical
           protein ZC13.1b protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 330 WVANSKFVQITTNAKRYLFTILYGSINFIQTYYYSVSEKPFHLNMLDDTYI 178
           W+ +  F    +    Y F+I Y S+   + Y YS+S K    N+L D+ +
Sbjct: 275 WLRHFLFSNPGSGVMIYFFSISYFSLKVGEVYRYSLSVKKSVGNLLTDSSV 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,332
Number of Sequences: 27780
Number of extensions: 359301
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)