Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31033
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.63 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 139 NFMTFTLLCLHRYYVSII 192
           NF+TF + C HR  VSII
Sbjct: 107 NFITFDIPCEHRGLVSII 124


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 300 TTNAKRYLFTILYGSINFIQTYYYSVSEKPFHLNMLDD 187
           T +  R + T  Y   N    YY S S  PF+   + D
Sbjct: 282 TNSDPRMILTEAYTEFNLTIKYYKSGSTVPFNFMFIAD 319


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 753 EPFGTKKNVEKNFKNHA 703
           E FG+KK +E + K H+
Sbjct: 267 ETFGSKKTMELHIKTHS 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,951
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)