Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31030
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 611 SNCFANESTTGSESRPAEKIRRETQRADAWV 519
           S+C  +ES    ES PA K   E    D+W+
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 707 FHQNRLASNVQPRGLGFAKQCPSASEET*QLKSNCFANESTTGSESRPAEKIRRETQR 534
           F Q    S  +PR +   K+  ++ +    +K+  FAN+  T S+S+P     R T++
Sbjct: 98  FEQQSTRSRSKPRIIS-NKETTTSKDVVHPVKTENFANDLDTTSDSKPVVHQTRATRK 154


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 28  PMICKRSKMSLRNKVTLYK 84
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,083
Number of Sequences: 5004
Number of extensions: 50828
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)