Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31030
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1051 - 34127251-34127510,34128625-34128868                       30   2.3  
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405     28   6.9  
10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864     28   9.2  
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     28   9.2  

>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 731 VAPKALSSFHQNRLASNVQPRGLGFAKQCPSASEET*QLKSNCFANESTTGSESRPA 561
           V+P A  S H  R+++     GL   +  P  +  T  L+S+  ++ ST+ + + PA
Sbjct: 6   VSPMAALSLHSGRISAAAIGGGLRSRRASPMGAAATPFLRSSFVSSSSTSSASASPA 62


>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
          Length = 488

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 454 GAGLGTPVTVLVELDKEVACNLTHASAR*VSRRIFSAGRDSDPVVDSFAKQLLL 615
           G GLG+ +   + +   + C+  HA    +  +I  + RDS+   +    Q L+
Sbjct: 189 GVGLGSVIFPYIPIPSHIRCDKAHAKLAKIFSKIVRSRRDSNRPAEQDVLQYLI 242


>10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864
          Length = 351

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 723 EGPFQFSPEQVGEQCSAKRVGIC 655
           E   +F PE+VGE C    VG C
Sbjct: 313 EAEIRFVPEEVGESCVELDVGFC 335


>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 671 LAEHCSPTCSGENWKGPSGPP 733
           +A+ CSP C G +W    G P
Sbjct: 579 VADGCSPGCGGSSWTDDGGAP 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,231
Number of Sequences: 37544
Number of extensions: 372187
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)