Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31030
(752 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 73 4e-13
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 73 4e-13
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 71 2e-12
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 69 9e-12
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 68 1e-11
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 68 1e-11
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 64 3e-10
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 64 3e-10
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 57 2e-08
AY089390-1|AAL90128.1| 238|Drosophila melanogaster AT21479p pro... 29 6.8
AE014296-2883|AAF49361.1| 238|Drosophila melanogaster CG6485-PA... 29 6.8
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 72.9 bits (171), Expect = 4e-13
Identities = 31/78 (39%), Positives = 53/78 (67%)
Frame = +1
Query: 22 LYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGA 201
L+ +I RS +SL K LY + ++P+ TY S ++ +A+R++ID +Q QSR R+ GA
Sbjct: 767 LHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGA 826
Query: 202 PWFVRNVDLHDDLGLESI 255
PW++RN ++H DL ++ +
Sbjct: 827 PWYLRNENIHRDLKIKLV 844
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 72.9 bits (171), Expect = 4e-13
Identities = 31/78 (39%), Positives = 53/78 (67%)
Frame = +1
Query: 22 LYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGA 201
L+ +I RS +SL K LY + ++P+ TY S ++ +A+R++ID +Q QSR R+ GA
Sbjct: 767 LHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGA 826
Query: 202 PWFVRNVDLHDDLGLESI 255
PW++RN ++H DL ++ +
Sbjct: 827 PWYLRNENIHRDLKIKLV 844
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 70.5 bits (165), Expect = 2e-12
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +1
Query: 25 YPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAP 204
Y ++ RSK+SL NK+T+YK + P Y ++ A +HI +Q++Q++ RL G
Sbjct: 777 YWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCE 836
Query: 205 WFVRNVDLHDDLGLESI 255
WFVRN LH DL L ++
Sbjct: 837 WFVRNTTLHRDLKLATV 853
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 68.5 bits (160), Expect = 9e-12
Identities = 30/80 (37%), Positives = 52/80 (65%)
Frame = +1
Query: 22 LYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGA 201
L+ +I S +SL +KV LY + ++P+ TY S ++ +A+ ++ID +Q QS+ R GA
Sbjct: 769 LHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGA 828
Query: 202 PWFVRNVDLHDDLGLESIGN 261
PW+VR+ ++ DL + S+ N
Sbjct: 829 PWYVRSENIQRDLNIPSVTN 848
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 68.1 bits (159), Expect = 1e-11
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = +1
Query: 10 ILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRL 189
I+ LYP+I ++SK+S+ NK+ ++KT P++ Y S V+ A+THI LQ Q++ +L
Sbjct: 797 IICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKL 856
Query: 190 AVGAPWFVRNVDLHDDLGLESI 255
+ P++ LH G++ +
Sbjct: 857 IMNLPYYTNTKYLHIKAGVQKV 878
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 68.1 bits (159), Expect = 1e-11
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = +1
Query: 10 ILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRL 189
I+ LYP+I ++SK+S+ NK+ ++KT P++ Y S V+ A+THI LQ Q++ +L
Sbjct: 745 IICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKL 804
Query: 190 AVGAPWFVRNVDLHDDLGLESI 255
+ P++ LH G++ +
Sbjct: 805 IMNLPYYTNTKYLHIKAGVQKV 826
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 63.7 bits (148), Expect = 3e-10
Identities = 28/83 (33%), Positives = 52/83 (62%)
Frame = +1
Query: 13 LGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLA 192
+ R+ +I R+K+SL KV +YK+ + P + Y V+ AA++H++ ++ LQ++ R
Sbjct: 778 VARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRI 837
Query: 193 VGAPWFVRNVDLHDDLGLESIGN 261
GAPW++R D+ DL + +G+
Sbjct: 838 SGAPWYMRTRDIERDLKVPKLGD 860
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 63.7 bits (148), Expect = 3e-10
Identities = 28/83 (33%), Positives = 52/83 (62%)
Frame = +1
Query: 13 LGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLA 192
+ R+ +I R+K+SL KV +YK+ + P + Y V+ AA++H++ ++ LQ++ R
Sbjct: 580 VARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRI 639
Query: 193 VGAPWFVRNVDLHDDLGLESIGN 261
GAPW++R D+ DL + +G+
Sbjct: 640 SGAPWYMRTRDIERDLKVPKLGD 662
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 57.2 bits (132), Expect = 2e-08
Identities = 28/90 (31%), Positives = 50/90 (55%)
Frame = +1
Query: 31 MICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWF 210
++ ++S M+LR K +Y C+ P+ Y ++ AA+++ + +Q LQ+R R P++
Sbjct: 785 LLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYY 844
Query: 211 VRNVDLHDDLGLESIGNT*SQRRNDTSIRL 300
VR LH DL L ++ S+ + S RL
Sbjct: 845 VRGTTLHRDLNLHTVEEQISRHTSRYSDRL 874
>AY089390-1|AAL90128.1| 238|Drosophila melanogaster AT21479p
protein.
Length = 238
Score = 29.1 bits (62), Expect = 6.8
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 16 GRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLA- 192
G+ +C + LR +++ C + ++ H T D +L+ +C A
Sbjct: 109 GKYVVSVCTSTPCKLRGGDEIFEACKK------TLNLEHGQTTP-DMQFTLKEDYCMGAC 161
Query: 193 VGAPWFVRNVDLHDDLGLESIGNT*SQRRND 285
V AP N D+++DL +S+ N + RND
Sbjct: 162 VNAPVLAVNDDMYEDLDEKSLANILADLRND 192
>AE014296-2883|AAF49361.1| 238|Drosophila melanogaster CG6485-PA
protein.
Length = 238
Score = 29.1 bits (62), Expect = 6.8
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 16 GRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLA- 192
G+ +C + LR +++ C + ++ H T D +L+ +C A
Sbjct: 109 GKYVVSVCTSTPCKLRGGDEIFEACKK------TLNLEHGQTTP-DMQFTLKEDYCMGAC 161
Query: 193 VGAPWFVRNVDLHDDLGLESIGNT*SQRRND 285
V AP N D+++DL +S+ N + RND
Sbjct: 162 VNAPVLAVNDDMYEDLDEKSLANILADLRND 192
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,765,781
Number of Sequences: 53049
Number of extensions: 616688
Number of successful extensions: 1297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -