Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31030
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    36   0.031
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    32   0.50 
AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    28   8.2  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    28   8.2  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 19  RLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 186
           +L  M  K S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 204 QLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 306 HDNRLIVDXADYSPNPDHAGASHRRRPRHVLTDPSD 413
           H  R   D     PN DH G +H RR R+   DPSD
Sbjct: 229 HRRRRSDDHDPNDPNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 306 HDNRLIVDXADYSPNPDHAGASHRRRPRHVLTDPSD 413
           H  R   D     PN DH G +HRR+  H   DPSD
Sbjct: 185 HRRRRSDDHDPNDPNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +3

Query: 306 HDNRLIVDXADYSPNPDHAGASHRRRPRHVLTDPSD 413
           H  R   D     PN DH G +HRRR R    DPSD
Sbjct: 274 HRRRRSEDHDPNDPNVDHTGHNHRRR-RDQDDDPSD 308



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 306 HDNRLIVDXADYSPNPDHAGASHRRRPRHVLTDPSDR 416
           H  R   D     PN DH G +H+R  RHV+   S R
Sbjct: 318 HRRRRSDDHDPNDPNVDHTGHNHKR--RHVIASRSRR 352


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 70  VTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 186
           + LYKT IRP + Y +VV +   ++    ++S+Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 586 VDSFAKQLLLSC*VSSEALGHCLANPNP 669
           V SFA  L L C ++S++  HC  +PNP
Sbjct: 82  VSSFA--LPLECHINSKSYTHCFKSPNP 107


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 31  MICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRL-AVGAPW 207
           M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR   L +VG+P 
Sbjct: 48  MVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSRSSNLSSVGSPQ 105

Query: 208 FVRN 219
            + N
Sbjct: 106 SLAN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,127
Number of Sequences: 27780
Number of extensions: 296667
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)