Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31030
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 357 HAGASHRRRP-RHVLTDPSDRITFALDAFSSN 449
           HA A  ++RP  +V+TD   ++ FAL     N
Sbjct: 291 HAIAGGQQRPDENVVTDKKSKVNFALPELQHN 322


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 428 CKGYSI*WIRKDVSRASTVTGSCMI 354
           CKG+    +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 428 CKGYSI*WIRKDVSRASTVTGSCMI 354
           CKG+    +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 255 RKYMKSASERYFDKAMRHDNR 317
           RKY +++ ER  D+A R  +R
Sbjct: 56  RKYRETSKERSRDRAERERSR 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,983
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)