Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31027
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 173 DSDLQLERINVYYNEASGGKYVPRAILATWSPAPWTLSAP 292
           D+ L+   I  Y N+  GG++V   I   W+P  +  + P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTPTVYVSNEP 108


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 394 VDSVLDVVRKESESCDCLQG 453
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 265  APSREDGAGHVLAAGGFIVVY 203
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 QLERINVYYNEASGGKYVPRAILATWSPA 271
           QL+R ++ +N    G+  PR+  A+ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 345 AGLSEDEVVRTEDLSERSGADRVHGAGLQVARMARG 238
           AGL+E+EVV  + ++E   ++        V R+  G
Sbjct: 62  AGLTEEEVVLAKTIAECPESENTVQKAALVLRLREG 97


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 QNHEHILSSPLAQKYQ 586
           Q H+ +++SPL+Q+ Q
Sbjct: 230 QQHQGVVTSPLSQQQQ 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,703
Number of Sequences: 438
Number of extensions: 5401
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)