Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31026
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 184 1e-47
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 182 4e-47
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 107 1e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 3e-16
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 30 0.48
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.84
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 3.4
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 27 3.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 184 bits (448), Expect = 1e-47
Identities = 92/163 (56%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
Frame = +2
Query: 224 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 403
F F K+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 404 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGG--VPALGSLPY*WSVSPLTTARSLN 577
T+GKE+VD V D+IR++AD C+GLQGFL+FHSFGG G+L T L
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 578 WSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTVAFMVDNEA 706
+S P QVST+VVEPYNS+ T H L FMVDNE+
Sbjct: 169 FSVYPAP--QVSTSVVEPYNSVLTTHAT-LDLADCTFMVDNES 208
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/63 (65%), Positives = 45/63 (71%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 261 TYP 269
P
Sbjct: 61 YVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 182 bits (444), Expect = 4e-47
Identities = 87/161 (54%), Positives = 108/161 (67%)
Frame = +2
Query: 224 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 403
F F K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 404 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGVPALGSLPY*WSVSPLTTARSLNWS 583
T+GKE++D VL+RIR++AD C+GLQGFL+FHSFGG G + + N
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172
Query: 584 SPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTVAFMVDNEA 706
P QVST+VVEPYNS+ T H L FMVDNEA
Sbjct: 173 FSVYPAPQVSTSVVEPYNSVLTTHAT-LDNSDCTFMVDNEA 212
Score = 88.2 bits (209), Expect = 1e-18
Identities = 45/68 (66%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 245
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 246 TGAASTYP 269
TG P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 107 bits (258), Expect = 1e-24
Identities = 59/151 (39%), Positives = 82/151 (54%)
Frame = +2
Query: 257 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 436
K+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 437 DRIRKLADQCTGLQGFLIFHSFGGVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLQVST 616
D +R+ A+ C LQGF + HS GG G S + + P + S
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSD 177
Query: 617 AVVEPYNSIFTNHTNPLSTLTVAFMVDNEAI 709
VVEPYN+ + H + F +DNEA+
Sbjct: 178 TVVEPYNATLSMH-QLVENSDETFCIDNEAL 207
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 261 TYP 269
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.2 bits (189), Expect = 3e-16
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 3/182 (1%)
Frame = +2
Query: 233 FLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 406
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 407 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGVPALGSLPY*WSVSPLTTARSLNWSS 586
+ I + ++D I + AD L+GF + HS G G + + + +
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTY 169
Query: 587 PSTPRLQ-VSTAVVEPYNSIFTNHTNPLSTLTVAFMVDNEAI**HLPA*SRQ*SGPT*HQ 763
P Q VS VV+PYNS+ L+ +V ++DN A+ H+ A PT HQ
Sbjct: 170 SVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVV-VLDNAAL-AHIAADRLHTQNPTFHQ 227
Query: 764 LN 769
N
Sbjct: 228 QN 229
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3
Query: 84 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 248
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 524 SLPY*WSVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLS 670
S+P S+SP + S+ STP++ ++ +P+NS H PLS
Sbjct: 533 SIPPPKSISPSILHKPSLESASSTPKISSCSSTPKPFNSKLRAHLPPLS 581
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 575 NWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLS 670
NW+ +TP + VS V+ P +S+ + T PL+
Sbjct: 360 NWNHCATPTIPVSLQVLTPNSSLKVDPTTPLT 391
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 316 ADLINNSRFKIDEDS--TGYVLAAPVSLKKVLKESSP 212
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 568 SCRSQRRDAPSIRK*TQSRYSTEGVEDQESLQTGTLVSELADSVQN 431
S + SIR ++SR S+ G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 349 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIW 182
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T V+T+ +S+ N + P+++ TV
Sbjct: 764 SSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVL-NSSTPITSSTV 809
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T V+T+ +S+ N + P+++ TV
Sbjct: 3236 SSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVL-NSSTPITSSTV 3281
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLT 679
S +P+T++ LN S+P T V+T+ +S N + P+++LT
Sbjct: 2528 SSTPITSSSVLNSSTPITSSTVVNTS-TPITSSTVVNSSTPITSLT 2572
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T ++T+ +S+ N + P+++ TV
Sbjct: 848 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL-NSSTPITSSTV 893
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T ++T+ +S+ N + P+++ TV
Sbjct: 2144 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL-NSSTPITSSTV 2189
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 548 SPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
+P+T++ LN S+P T V+T+ +S+ N + P+++ TV
Sbjct: 2314 TPITSSSVLNSSTPITSSTVVNTSTPITSSSVL-NSSTPITSSTV 2357
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T ++T+ +S+ N + P+++ TV
Sbjct: 2456 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL-NSSTPITSSTV 2501
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 548 SPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
+P+T++ LN S+P T V+T+ +S+ N + P+++ TV
Sbjct: 2722 TPITSSSVLNSSTPITSSTVVNTSTPITSSSVL-NSSTPITSSTV 2765
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T V+T+ +S N + P+++ TV
Sbjct: 1400 SSTPITSSSVLNSSTPITSSTVVNTS-TPITSSTVVNSSTPITSSTV 1445
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 542 SVSPLTTARSLNWSSPSTPRLQVSTAVVEPYNSIFTNHTNPLSTLTV 682
S +P+T++ LN S+P T V+T+ +S N + P+++ TV
Sbjct: 2240 SSTPITSSSVLNSSTPITSSTVVNTS-TPITSSTVVNSSTPITSSTV 2285
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 179 WPDAHRQDHRGWRRFFQHFLQR 244
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,678,157
Number of Sequences: 5004
Number of extensions: 80785
Number of successful extensions: 381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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