Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31024
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    79   8e-16
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    70   4e-13
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    55   1e-08
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.85 
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    29   0.85 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.0  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     26   7.9  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 38/84 (45%), Positives = 50/84 (59%)
 Frame = +3

Query: 258 AVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKP 437
           ++VA T VV E  V+G AADV               KPG  N+ VT+ + KI+  YGCKP
Sbjct: 124 SLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKP 183

Query: 438 IEGMLSHQLKQFRIDGEKSIIQNP 509
           + GMLSHQ ++  IDG+K +I NP
Sbjct: 184 VAGMLSHQQEREVIDGKKQVILNP 207



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   EQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPI 180
           ++V+  C P A   +IC  GD+L+ E   KV++  KD+ KGIAF T VS N+   H SP+
Sbjct: 37  KKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT-KDAYKGIAFPTAVSPNDMAAHLSPL 95

Query: 181 ASEPD--YILKKGDLAKIDLGAHIDG 252
            S+P+    LK GD+ KI LGAHIDG
Sbjct: 96  KSDPEANLALKSGDVVKILLGAHIDG 121



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 485 REEYYTKSSEAQRKEHEKATLEKYEVYAMDVLISTG-EAVGREMDTRCTIYQKTDEVYQL 661
           +++     S++QR E +  T E+ EVY +D+L+ST      +  D    IY+KTD  Y L
Sbjct: 200 KKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKVKRSDIATRIYKKTDTTYML 259

Query: 662 KLKGFQNVL**GFVTNLGHMPFNLR 736
           KL+  + V      T  G  PF+ R
Sbjct: 260 KLQASRKVY-SEIQTKFGPFPFSTR 283


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
 Frame = +1

Query: 4   QVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSP-- 177
           QV ++CVP AS REI  +GD L+ E  + ++K ++  +KGIA  T + VNNC  +++P  
Sbjct: 34  QVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPTSICVNNCAYNYAPGP 92

Query: 178 ----IASEPDYILKKGDLAKIDLGAHIDG 252
                 ++  Y L+ GD+ KI +G H DG
Sbjct: 93  ESVIAGNDNSYHLQVGDVTKISMGLHFDG 121


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 38/60 (63%)
 Frame = +1

Query: 73  LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
           +E T +   +E   K GI F T VS+N+C  H++P A +   ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 217  NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 128
            +L+ S+C  V+ QW+  ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 133 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
           S C SVN  ICH  P    P   L+ GD+  ID+  + +G
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNG 216


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 444 PQLAYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFHPQLL 274
           P LAY  + + FS     +   +SS +      +P   ++ L ++ LQ   +LH+H  +L
Sbjct: 375 PSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLIL 434

Query: 273 YELQQL*SINV 241
           Y +    S N+
Sbjct: 435 YVINTYYSGNI 445


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 624 HLVSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASEDFV*YSSLHQYGTASVGVRAY 445
           H  S +  TASP+ +RTS   ++Y +    + S  C S+     S      +AS   R  
Sbjct: 208 HGFSNALSTASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEPPASSASTSPRNT 267

Query: 444 PQLAYN 427
           P  + N
Sbjct: 268 PTPSNN 273


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 830 GRFIENLEWPQWSLWLRHSTTPN 762
           GR +ENL W   S+ L+ + TPN
Sbjct: 55  GRRVENLTWRLMSINLQKNLTPN 77


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 20  AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 115
           AF T +Q  Y N   NLY+   ++ S  R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 858 EFKWATNSPGTLHREPGMAPMEFVVE 781
           E K A+  P  LH +P + P E +VE
Sbjct: 332 EMKMASLLPKALHGDPSIVPAEKIVE 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,797,793
Number of Sequences: 5004
Number of extensions: 83119
Number of successful extensions: 254
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)