Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31024
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 86 3e-17
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 41 0.001
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 39 0.004
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 38 0.014
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 37 0.018
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 37 0.024
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 34 0.13
01_05_0072 + 17891199-17892279,17893751-17893884,17893966-178941... 29 3.6
12_01_0970 + 9776851-9778610,9779519-9779643,9779698-9779768,978... 28 8.3
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 28 8.3
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 86.2 bits (204), Expect = 3e-17
Identities = 44/95 (46%), Positives = 58/95 (61%)
Frame = +3
Query: 216 FSQDRSWCSH*WIIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVT 395
+ +D C IAVVAHT V+ + V+G+AADV +PG +N VT
Sbjct: 58 YIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPGKKNKDVT 117
Query: 396 EAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSII 500
EAIQK++A Y CK +EG+LSHQLKQF IDG K ++
Sbjct: 118 EAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVL 152
Score = 41.1 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Frame = +2
Query: 533 EKATLEKYEVYAMDVLISTGEAVGREMDTR-CTIYQK-TDEVYQLKLKGFQNVL**GFVT 706
+ A E+ EVYA+D++ STGE + +D + TIY++ D+ Y LK+K + +
Sbjct: 162 DDAEFEENEVYAIDIVTSTGEGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIF-SEISQ 220
Query: 707 NLGHMPFNLRILIKEPVPG*VLLNASTTNSIGAIPGSL*SVPGELVAHL 853
MPF R L +E L+ + P L PG+LVAH+
Sbjct: 221 KFPIMPFTARAL-EEKRARLGLVECMNHELLQPYP-VLHEKPGDLVAHI 267
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 73 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
LE + KE + GIAF T S+N H++P + + +L+ D+ K+D G HIDG
Sbjct: 274 LENMVRKLIKENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDG 332
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 524 KEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCTIYQKTDEVYQLKLK 670
K E+ +E+ E YA++ STG+ RE D C+ Y K +V + L+
Sbjct: 422 KGGEQTKMEEGEFYAIETFGSTGKGFVRE-DLECSHYMKNFDVGHVPLR 469
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 73 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
LE + KE + GIAF T S+N H++P + +L+ D+ K+D G HI+G
Sbjct: 218 LENMVRKLIKENGLEAGIAFPTGCSLNCVAAHWTPNGGDKT-VLQYDDVMKLDFGTHING 276
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 524 KEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCTIYQKTDEVYQLKLK 670
K E+ +E+ E YA++ STG+ RE D C+ Y K +V + L+
Sbjct: 366 KGGEQTKMEEGEFYAIETFGSTGKGYVRE-DLECSHYMKNFDVGHVPLR 413
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 121 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
G S C SVN CICH P + E L+ GD+ ID+ +++G
Sbjct: 195 GFPKSVCTSVNECICHGIPDSRE----LQDGDIINIDVTVYLNG 234
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 37.1 bits (82), Expect = 0.018
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 121 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
G S C SVN CICH P +L+ GD+ ID+ +++G
Sbjct: 465 GFPKSVCTSVNECICHGIP----DSRVLQNGDIINIDVTVYLNG 504
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 121 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
G S C SVN CICH P S P L+ GD+ ID+ +++G
Sbjct: 161 GFPKSVCTSVNECICHGIP-DSRP---LEDGDIINIDVTVYLNG 200
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 121 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
G S C S+N C+CH P +++ L+ GD+ +D+ ++G
Sbjct: 154 GFPKSICTSLNECVCHGVPDSTQ----LQTGDIMNVDVNVFLNG 193
>01_05_0072 +
17891199-17892279,17893751-17893884,17893966-17894115,
17894207-17894524
Length = 560
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 752 AL*SKCAD*RACGPGWLRTLTIEHSGSPLVSIGTPHQFFGI 630
AL SKC A GP +LR H+ SPL+ + H G+
Sbjct: 28 ALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGL 68
>12_01_0970 +
9776851-9778610,9779519-9779643,9779698-9779768,
9780158-9780586
Length = 794
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 781 GIQQHLTWHWLFNQNAQIEGHVAQVGYEPSL*NIL 677
G ++H W ++ I ++++GYEP N+L
Sbjct: 470 GDKEHPRWQEIYRALEDIVSRISELGYEPETSNVL 504
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 132 FNMRFCEQLHLSLFAHCERTGLHSEKRRFSQDRSWCSH 245
F C + L LFA E TGL K F+ + CSH
Sbjct: 288 FTANGCSEKALELFARMEITGLVPNKITFNTVLNACSH 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,042,890
Number of Sequences: 37544
Number of extensions: 515900
Number of successful extensions: 1300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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