Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31024
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              120   2e-27
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         54   1e-07
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_9475| Best HMM Match : PAN (HMM E-Value=0.0022)                     33   0.30 
SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        29   3.7  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    28   8.5  
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  120 bits (289), Expect = 2e-27
 Identities = 51/73 (69%), Positives = 60/73 (82%)
 Frame = +1

Query: 34  SAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKG 213
           +AR +CE GD L+LEET+KV+KKEK+ KKGIAF TC+SVNNC+CHFSP+ SEPD  L  G
Sbjct: 48  TARTLCEKGDALILEETDKVYKKEKELKKGIAFPTCISVNNCVCHFSPLLSEPDITLNDG 107

Query: 214 DLAKIDLGAHIDG 252
           DL KID G HIDG
Sbjct: 108 DLVKIDFGVHIDG 120



 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 50/98 (51%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
 Frame = +3

Query: 255 IAVVAHTVVVG---ESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEY 425
           IAV+ HT+VVG   E++V+GR ADV               KPG EN  VTE +QK++  +
Sbjct: 122 IAVIGHTIVVGCSKENKVTGRKADVLLAAYLASEVAQRMVKPGAENSTVTELVQKVAESF 181

Query: 426 GCKPIEGMLSHQLKQFRIDGEKSIIQNPQKHSVKNMKK 539
            CKPIEGMLSHQLK+  IDGEK+IIQNP +   K+  K
Sbjct: 182 KCKPIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKDHSK 219



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 34/81 (41%), Positives = 46/81 (56%)
 Frame = +2

Query: 509 SEAQRKEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCTIYQKTDEVYQLKLKGFQNVL 688
           +E QRK+H K     +EVY +DVL+STG+   +E DTR T+Y++T  +Y LK+K    V 
Sbjct: 210 NEQQRKDHSKCEFAVHEVYGVDVLVSTGDGKTKEKDTRTTVYKRTGNIYNLKMKA-SRVF 268

Query: 689 **GFVTNLGHMPFNLRILIKE 751
                     MPF LR L  E
Sbjct: 269 FSDVCNKFTMMPFTLRALEDE 289


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
 Frame = +1

Query: 46  ICEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCICHFSPIASEPDYILKKGDL 219
           +C+ G+   ++ET + ++ E D K  KG+AF T  S+N+C  H++P A +   +L   D+
Sbjct: 82  LCDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDV 138

Query: 220 AKIDLGAHIDG 252
            KID G HI+G
Sbjct: 139 CKIDFGTHING 149



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +1

Query: 124 IAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
           +AF T  S+N+C  H++P A +   +L   D+ KID G HI+G
Sbjct: 2   LAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHING 43


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 720  CPSICAF*LKSQCQVRCC*MPQPQTPL 800
            CP+ICA    S+C  +CC  P+PQ  L
Sbjct: 1825 CPTICASKCISKCPEKCCKQPEPQPAL 1851



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 717  TCPSICAF*LKSQCQVRCC 773
            TCP ICA   K  C V+CC
Sbjct: 2180 TCPKICAQECKPYCPVKCC 2198



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 708  TWATCPSICAF*LKSQCQVRCC 773
            T A CPS C+   K +C V+CC
Sbjct: 1433 TTAECPSECSETCKPECPVKCC 1454



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 696  GS*PTWATCPSICAF*LKSQCQVRCC 773
            GS PT + CPS C    +  C + CC
Sbjct: 1897 GSAPTSSQCPSSCLLACQPSCPMECC 1922



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 705  PTWATCPSICAF*LKSQCQVRCC*MPQPQTPLGPFQVLYEASQENWWP 848
            P   +CPS C+   +  C ++CC   +P  P  P  +L ++  +N  P
Sbjct: 2138 PKPESCPSYCSKDCRPPCPLKCC--EEPGAP-KPVTILIDSDSKNTCP 2182


>SB_9475| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 556

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 732 RLKGMWPRLV-TNPHYRTFWKPFSFNWYTSS 643
           R+K   P+++ T+PH R  W P  FN +TSS
Sbjct: 98  RIKTRSPKMIETSPHVRVIWNPDFFNLWTSS 128


>SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 PGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQN 506
           P  + + VTEAI ++      KPIE    HQ  + +I  + S  Q+
Sbjct: 11  PSRDCFLVTEAISQLRRPLDRKPIESAKKHQASKKQICAKSSTTQS 56


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 754 SARLGVVECLNHKLHWGHSRFSMKRP 831
           SA+L V +C+   L  GH +F+ K+P
Sbjct: 133 SAKLCVAKCMTRALEMGHVQFTQKKP 158


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 31  ASAREICEFGDKLVLEETNKVFKKEKDSKKG 123
           A   E+ E G K +LEE  + F+KE + ++G
Sbjct: 877 AMKNELKEMGKKQILEEKERKFRKEMELQEG 907


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = -3

Query: 615 SISRPTA--SPVDIRTSIAYTSYFSSVAFSCSLRCASEDFV*YSSLHQYGTASVGVRAYP 442
           SIS PT   SP+ + T   Y S F+      S+R  +     YS LH +   S+    YP
Sbjct: 54  SISTPTTPYSPLHMHT---YDSIFTLHTHD-SIRTPTTP---YSPLHTHD--SIPTPTYP 104

Query: 441 QLAYNHIQHLFSEWLQ*LHSSQYQASGDEEPLH*HDELPT 322
            L   H  H  S      ++  +  +    PLH HD +PT
Sbjct: 105 HLRL-HTHHSISRLYT--YTYDFIPTTPYSPLHTHDSIPT 141



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 387 HSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFH 286
           H S    +    PLH HD +PT    H+ RLH H
Sbjct: 79  HDSIRTPTTPYSPLHTHDSIPTPTYPHL-RLHTH 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,189,858
Number of Sequences: 59808
Number of extensions: 623700
Number of successful extensions: 1412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)