Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31024
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...   109   3e-24
AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    53   3e-07
Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    28   9.8  

>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score =  109 bits (261), Expect = 3e-24
 Identities = 44/85 (51%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   EQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPI 180
           ++V+A     A A ++C+ GDKL+LE+T K++KKEK+  KGIA  TC+S++NCICH++P+
Sbjct: 44  KEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISIDNCICHYTPL 103

Query: 181 ASEPDYILKKGDLAKIDLGAHIDGL 255
            SE   +LK G + K+DLG HIDGL
Sbjct: 104 KSEAPVVLKNGQVVKVDLGTHIDGL 128



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
 Frame = +3

Query: 252 IIAVVAHTVVVGESE---VSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAE 422
           +IA  AHTVVVG S+   V+G+ AD+               +P TEN  +T+ I K +AE
Sbjct: 128 LIATAAHTVVVGASKDNKVTGKLADLLRGTHDALEIAIRSLRPDTENTTITKNIDKTAAE 187

Query: 423 YGCKPIEGMLSHQLKQFRIDGEKSIIQN---PQKHSVKNMK 536
           +G  PIE MLSHQL++  IDGEK IIQN    QK  ++ +K
Sbjct: 188 FGLTPIENMLSHQLERNEIDGEKKIIQNSGEKQKGEIEKIK 228



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = +2

Query: 506 SSEAQRKEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCTIYQKTDEV-YQLKLKGFQN 682
           S E Q+ E EK  ++K+E YA+D+L STG+   ++MDTR T+++K ++V YQLK+K    
Sbjct: 216 SGEKQKGEIEKIKIDKHEAYAIDILFSTGKGQPKDMDTRTTVFRKNEQVSYQLKMKA-SR 274

Query: 683 VL**GFVTNLGHMPFNLRILIKE 751
           V         G MPF+LR   +E
Sbjct: 275 VFFSDVNKVHGPMPFSLRSFEEE 297


>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 29/76 (38%), Positives = 44/76 (57%)
 Frame = +1

Query: 25  PDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYIL 204
           P  +  EICE      LE T++   KE+  + G+AF T  S+N+C  H++P A +   +L
Sbjct: 153 PGMTMIEICER-----LETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTPNAGDTT-VL 206

Query: 205 KKGDLAKIDLGAHIDG 252
           + GD+ KID G H+ G
Sbjct: 207 QYGDVCKIDYGIHVRG 222


>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 46  ICEFGDKLVLEETNKVFKKEKD--SKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDL 219
           I +FG+++ L ET  +  ++KD  SK     +TC      + +  PI    D +++  D 
Sbjct: 319 IDQFGERVYLSETTSIDLEDKDRVSKSSTRMTTCGDGAESLRYHWPIDEMLDELIEL-DS 377

Query: 220 AKIDLG 237
             +DLG
Sbjct: 378 CTMDLG 383


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 46  ICEFGDKLVLEETNKVFKKEKD--SKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDL 219
           I +FG+++ L ET  +  ++KD  SK     +TC      + +  PI    D +++  D 
Sbjct: 319 IDQFGERVYLSETTSIDLEDKDRVSKSSTRMTTCGDGAESLRYHWPIDEMLDELIEL-DS 377

Query: 220 AKIDLG 237
             +DLG
Sbjct: 378 CTMDLG 383


>Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical
           protein R07B7.14 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 49  CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKI 228
           C+FGDK +  E +K+ K          FS C  +       +P+A + + I KKG++ K+
Sbjct: 72  CKFGDKCL--EDHKIPKPGTRLCGSCRFSKCEQMG-----MNPMAIKSEIISKKGNILKM 124

Query: 229 DL 234
           +L
Sbjct: 125 EL 126


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 432 KPIEGMLSHQLKQFRIDGEKSIIQNP-QKHSVKNMKKQHLKSMK 560
           K +EG+L H + +  +   + I++N   + +++  K  H+KS++
Sbjct: 112 KDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPVHIKSLR 155


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 432 KPIEGMLSHQLKQFRIDGEKSIIQNP-QKHSVKNMKKQHLKSMK 560
           K +EG+L H + +  +   + I++N   + +++  K  H+KS++
Sbjct: 112 KDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPVHIKSLR 155


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 390 VTEAIQKISAEY-GCKPIEGMLSHQLKQFRIDGEKSIIQNPQKHSVKNMKKQHLKS 554
           +   I K+S ++ G   I     + LK+  +   KSI QNP KH  KN+K Q L +
Sbjct: 46  INTLINKVSQDHLGIHAINSRTEYFLKKSFVF--KSIFQNPTKH--KNLKIQFLSN 97


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 669 FSFNWYTSSVFWYMVHLVSISRPTASPVDIRTSIAYTSYFSSVA 538
           F+F W  S ++W ++ +  ++        + +S+   +Y SS+A
Sbjct: 290 FAFCWVPSYLYWLLLRMAELAATDLWNPGLNSSLTIMTYISSLA 333


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 133 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 252
           S C SVN  ICH  P   +    L+ GDL  +D+  +  G
Sbjct: 173 SCCTSVNEVICHGIPDMRK----LENGDLCNVDVTVYHRG 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,030,665
Number of Sequences: 27780
Number of extensions: 474364
Number of successful extensions: 1480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)