Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31023
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    24   1.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    24   1.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.8  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 550 LCFCFFFMVLTVTFYQHS 497
           LCFCF+++++ V  +  +
Sbjct: 324 LCFCFYWLLVMVAMFSRT 341


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 550 LCFCFFFMVLTVTFYQHS 497
           LCFCF+++++ V  +  +
Sbjct: 280 LCFCFYWLLVMVAMFSRT 297


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 671 ACTSEATVELGSSGRVGG 618
           ACT ++ V  GS G VGG
Sbjct: 143 ACTPDSRVGYGSVGLVGG 160


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 654 DCRVRIFRQSWWVKEIEEGVSLDGLSDSAKLTHGTCAS 541
           DC  R+  +       EEG  L+G  D+  +T  + AS
Sbjct: 7   DCPKRMKWEGGEEGSPEEGDKLEGDEDTGSMTPNSAAS 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,571
Number of Sequences: 336
Number of extensions: 3627
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)