Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31023
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 89 9e-19
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 85 1e-17
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 3.2
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.5
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.3
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 7.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.7
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 88.6 bits (210), Expect = 9e-19
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Frame = +1
Query: 187 RASNGSQCKGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 366
+ G KG P + ++ L LSEM+ DE L L DI++ E P F LEF F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212
Query: 367 APNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXX 546
A N +FTN +LTK Y + + ++ E G +++W
Sbjct: 213 AENPFFTNKILTKTYYYMEESGPSNVFLYDHAE-----GDKVDWKENADLTVRTVTKKQR 267
Query: 547 XXXVGQFRTVTKSVQADSFFNFFNPPTLP-EDPNSTVASDVQALLTADFEI 696
Q R V SV DSFFNFFNPPT P E+ + + ++ LL D++I
Sbjct: 268 NKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQI 318
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 101 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNV 253
D+ EEE+ + + A E +E ++ + + KGIP+FW +NV
Sbjct: 126 DEPTEEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNV 175
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 84.6 bits (200), Expect = 1e-17
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNEYFT 387
KG P + + ++ EM+ DE +L+ L DI+ + D + LEF F N+YFT
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFT 223
Query: 388 NTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINW-NAGKT*LXXXXXXXXXXXXVG 561
N +LTK Y K D+ SP G +Y +G +INW K
Sbjct: 224 NKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINWIKPEKNLTVRVETKKQRNRKTN 277
Query: 562 QFRTVTKSVQADSFFNFFNPPTLPEDPNSTVASDVQALLTADFEI 696
Q R V +V DSFFNFF+PP L +D + D LL D+++
Sbjct: 278 QTRLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQL 322
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 203 PNVKGIPDFWYNIFRNV 253
P+ KGIP+FW NV
Sbjct: 161 PDPKGIPEFWLTCLHNV 177
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -1
Query: 395 TVFV---KYSFGAK*-NSKVKLMGSSCICTLISCKH 300
T+FV KYSF +K SK K SC LISC H
Sbjct: 354 TLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAH 389
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 137 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 223
+N+ + E EEK D +AIE + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 357 FQSEAYGVFMHLHFNILQAF*NWFIMFLHHFAEH*TFLN 241
F + Y F H H +L+++ N ++ L +H T+LN
Sbjct: 205 FIARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLN 243
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -2
Query: 211 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 59
Y G+ + + ++ ILLF ++ G++ L++P + SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 113 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 220
EEEL+ ++ N + E++KD+ +P P++ +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 184 YRASNGSQCKGYPRLLVQHIQEC 252
YR SNG + Y L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,402
Number of Sequences: 5004
Number of extensions: 60049
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -