Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31023
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 93 2e-19
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 90 2e-18
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 83 3e-16
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 82 6e-16
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 44 1e-04
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 37 0.022
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 37 0.022
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 29 4.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.8
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 93.5 bits (222), Expect = 2e-19
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 202 SQCKGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEY 381
+ KG P + ++ +LSE +QE DEP LK L+DIK +DP F L+F+F N +
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPF 188
Query: 382 FTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVG 561
F N+VLTK Y M DE+ P+ + G EI W GK L
Sbjct: 189 FKNSVLTKTYHM---VDEDEPI------LEKAIGTEIEWYPGKN-LTQKILKKKPKKGSK 238
Query: 562 QFRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEI 696
+ +TK+ +SFFNFF+PP +P ED + A ++Q + D++I
Sbjct: 239 NAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDI 286
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 89.8 bits (213), Expect = 2e-18
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 390
KG P + ++ +LSE +QE DE LK L+DIK +P F LEFYF N +F N
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKN 188
Query: 391 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQFR 570
+VLTK Y M DE+ P+ + G EI W GK L +
Sbjct: 189 SVLTKTYHM---IDEDEPI------LEKAIGTEIEWFPGKC-LTQKVLKKKPKKGSKNTK 238
Query: 571 TVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEI 696
+TK+ +SFFNFF+PP +P+D + A +Q + D++I
Sbjct: 239 PITKTENCESFFNFFSPPQVPDDDEEIDEDTAEQLQNQMEQDYDI 283
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 82.6 bits (195), Expect = 3e-16
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 390
KG P ++ ++ +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 391 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQFR 570
VLTK Y M + DE P + G EI W+ G +
Sbjct: 163 QVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPGN----CLTQEVLTKESSESTK 210
Query: 571 TVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEI 696
+TK+ + +SFFNFF+PP +PED + A ++Q + D++I
Sbjct: 211 PITKTEEYESFFNFFSPPQVPEDDAKIDENTAEELQNQMERDYDI 255
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 81.8 bits (193), Expect = 6e-16
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Frame = +1
Query: 202 SQCKGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEY 381
S+ KG P + ++ +L+E + E DE LK L+DIK +DP F EF+F N +
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPF 264
Query: 382 FTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVG 561
F N VLTK Y M + DE P + G EI W+ G
Sbjct: 265 FKNQVLTKTYHMIDEDDE--------PILEKAIGTEIEWHPG----YCLTQEVLTKESSE 312
Query: 562 QFRTVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEI 696
+ +TK+ + +SFFNFF+PP +P+D + A ++Q + D++I
Sbjct: 313 STKPITKTEECESFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYDI 360
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 MLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTVLTKEY 411
ML E++ E D+ I K L+ I V ED S +++ F+PN YF +T LTK Y
Sbjct: 88 MLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYFEDTKLTKTY 140
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 36.7 bits (81), Expect = 0.022
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 568 RTVTKSVQADSFFNFFNPPTLPED 639
+ +TK+ + +SFFNFF+PP +P+D
Sbjct: 102 KPITKTEECESFFNFFSPPQVPDD 125
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 MLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTVLTKEY 411
+LSE++ E D+ + K L+ + V +D S +++ F+ N YF + LTK Y
Sbjct: 93 LLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYFEDKELTKTY 145
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 568 RTVTKSVQADSFFNFFNPP-TLPEDPNSTVASDVQALLTAD 687
RT TK + D FN +PP L E PNS + + + D
Sbjct: 188 RTFTKEAEKDHLFNCGDPPRILNEPPNSAIQEKNKGTMDID 228
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 41 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 163
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,100
Number of Sequences: 37544
Number of extensions: 381732
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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