Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31023
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   4e-22
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      30   2.6  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         30   2.6  
SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)                 29   4.5  
SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)                      29   5.9  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   5.9  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   7.8  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 12/103 (11%)
 Frame = +1

Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKV------------QMHEDPISFTL 354
           KG P   +  ++   +LSEM+QEHDEPILK L D++V                 P+ F L
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGFVL 297

Query: 355 EFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKG 483
           EF+F PN +FTNTVLTK Y MKC+PDE+ P  FEGPEI S  G
Sbjct: 298 EFHFTPNPFFTNTVLTKSYKMKCEPDEDDPFSFEGPEIVSTSG 340



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
 Frame = +2

Query: 38  RALIVNGTYEPNDDECLNPW----RDDTEEEELARAVQNAAIT-EGEEK---KDDKAIEP 193
           R  I +G  EP D+EC  P      D+ EE+E   A + + ++ E EEK    D++ IE 
Sbjct: 171 RRNIASGGVEPTDEECRWPSDAEDEDEAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIET 230

Query: 194 PMDP-NVKGIPDFWYNIFRNV 253
              P + KGIP+FW    +NV
Sbjct: 231 EQLPEDTKGIPEFWLTAMKNV 251


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/70 (22%), Positives = 38/70 (54%)
 Frame = -3

Query: 708 RMYDDLKVRSQQRLYIRGDCRVRIFRQSWWVKEIEEGVSLDGLSDSAKLTHGTCASVSSL 529
           R+  D++    +++ I+  C +   RQ W  + +++ +S+D L  ++  +  T A+ SSL
Sbjct: 259 RIKKDVENELSEKIEIKLVCGLTT-RQKWLYQAVKQKISIDDLVYTSASSSATSATTSSL 317

Query: 528 WS*QLRFTSI 499
            +  ++F  +
Sbjct: 318 MNLVMQFRKV 327


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 217  YPRLLVQHIQECLMLSEMMQEHDEP-ILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNT 393
            Y   LV+  +  LM +E+    D+P   + L         D ++  ++  FA  +  +NT
Sbjct: 962  YTGALVEEKKIELMKTELESSEDKPDFFRFLLSSGKLTENDLLASVIDLLFAGVDTTSNT 1021

Query: 394  VLTKEYLMKCKPDEESPLEFE 456
            +L   Y+M   P E+  L  E
Sbjct: 1022 MLWVLYMMSQNPTEQQKLHHE 1042


>SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)
          Length = 322

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 550 LCFCFFFMVLTVTFYQHSSLFHIP 479
           +C+C FF++ TVT Y+   LF +P
Sbjct: 195 ICWCPFFILFTVTQYRPLVLFSLP 218


>SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 571 TVTKSVQADSFFNFFNPPTLPEDPNSTVASDV-QALLTAD 687
           T   +V    F N+F P    ++ NS  ASDV  A+L  D
Sbjct: 1   TAVSNVSRHGFVNYFGPQRFGQEDNSVNASDVGLAMLQGD 40


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 149 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 250
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 59  TYEPNDDECLNPWRDDTEEEEL 124
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,544,429
Number of Sequences: 59808
Number of extensions: 442409
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)