Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31023
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    30   0.022
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    30   0.022
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.8  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +1

Query: 295 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 474
           +KC+      M  D I +    +F  N      +L +EY+    P  ES +E    E+ S
Sbjct: 72  MKCIMIATKAMKNDVILWD---FFVKN---ARMILLEEYI----PRVESVVETCKKEVTS 121

Query: 475 CKGCEINWNAGK 510
            +GCE+ W  GK
Sbjct: 122 TEGCEVAWQFGK 133


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +1

Query: 295 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 474
           +KC+      M  D I +    +F  N      +L +EY+    P  ES +E    E+ S
Sbjct: 46  MKCIMIATKAMKNDVILWD---FFVKN---ARMILLEEYI----PRVESVVETCKKEVTS 95

Query: 475 CKGCEINWNAGK 510
            +GCE+ W  GK
Sbjct: 96  TEGCEVAWQFGK 107


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 604  FNFFNPPTLPEDPNSTVASDVQALLTADF 690
            FNF+NPP     P    A +V  +L   +
Sbjct: 1161 FNFWNPPPFMPSPFMAGAPNVPTILPEQY 1189


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 80  ECLNPWRDDTEEEELA 127
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 223 RLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 345
           +LL QHI     L   MQ+H       LQ  + Q H+D  S
Sbjct: 76  QLLQQHILSPTQLQSFMQQHS----LYLQQQQQQHHQDSSS 112


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 112 FSVITPWVETFIIIRFICAIHN 47
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 62  YEPNDDECLNPWRDDTEEEELARAVQNAAITEG 160
           ++P D+EC          E   R   N+ IT G
Sbjct: 199 WQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,748
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)